This Article
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrowReprints and Permissions
Right arrow Copyright Information
Right arrow Books from ASM Press
Right arrow MicrobeWorld
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Razin, A
Right arrow Articles by Cedar, H
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Razin, A
Right arrow Articles by Cedar, H

 Previous Article  |  Next Article 

Microbiol Mol Biol Rev. 1991 September; 55(3): 451-458

DNA methylation and gene expression.

A Razin and H Cedar

Department of Cellular Biochemistry, Hebrew University Medical School, Jerusalem, Israel.

SUMMARY

A large body of evidence demonstrates that DNA methylation plays a role in gene regulation in animal cells. Not only is there a correlation between gene transcription and undermethylation, but also transfection experiments clearly show that the presence of methyl moieties inhibits gene expression in vivo. Furthermore, gene activation can be induced by treatment of cells with 5-azacytidine, a potent demethylating agent. Methylation appears to influence gene expression by affecting the interactions with DNA of both chromatin proteins and specific transcription factors. Although methylation patterns are very stable in somatic cells, the early embryo is characterized by large alterations in DNA modification. New methodologies are now becoming available for studying methylation at this stage and in the germ line. During development, tissue-specific genes undergo demethylation in their tissue of expression. In tissue culture cells this process is highly specific and appears to involve an active mechanism which takes place in the absence of DNA replication. The X chromosome undergoes inactivation during development; this is accompanied by de novo methylation, which appears necessary to stably maintain its silent state. As opposed to the programmed changes in DNA methylation which occur in vivo, immortalized tissue culture cells demonstrate alterations in DNA modification which take place over a long time scale and which appear to be the result of selective pressures present during the growth of these cells in culture.


Microbiol Mol Biol Rev. 1991 September; 55(3): 451-458




This article has been cited by other articles:

  • MORA, G. F. (2009). Systemic Sclerosis: Environmental Factors. The Journal of Rheumatology 36: 2383-2396 [Abstract] [Full Text]  
  • Brunner, A. L., Johnson, D. S., Kim, S. W., Valouev, A., Reddy, T. E., Neff, N. F., Anton, E., Medina, C., Nguyen, L., Chiao, E., Oyolu, C. B., Schroth, G. P., Absher, D. M., Baker, J. C., Myers, R. M. (2009). Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Res 19: 1044-1056 [Abstract] [Full Text]  
  • Marques-Mari, A.I., Lacham-Kaplan, O., Medrano, J.V., Pellicer, A., Simon, C. (2009). Differentiation of germ cells and gametes from stem cells. Hum Reprod Update 15: 379-390 [Abstract] [Full Text]  
  • Asada, H., Yamagata, Y., Taketani, T., Matsuoka, A., Tamura, H., Hattori, N., Ohgane, J., Hattori, N., Shiota, K., Sugino, N. (2008). Potential link between estrogen receptor-{alpha} gene hypomethylation and uterine fibroid formation. Mol Hum Reprod 14: 539-545 [Abstract] [Full Text]  
  • Jung, J. K., Arora, P., Pagano, J. S., Jang, K. L. (2007). Expression of DNA Methyltransferase 1 Is Activated by Hepatitis B Virus X Protein via a Regulatory Circuit Involving the p16INK4a-Cyclin D1-CDK 4/6-pRb-E2F1 Pathway. Cancer Res. 67: 5771-5778 [Abstract] [Full Text]  
  • Cole, B. F., Baron, J. A., Sandler, R. S., Haile, R. W., Ahnen, D. J., Bresalier, R. S., McKeown-Eyssen, G., Summers, R. W., Rothstein, R. I., Burke, C. A., Snover, D. C., Church, T. R., Allen, J. I., Robertson, D. J., Beck, G. J., Bond, J. H., Byers, T., Mandel, J. S., Mott, L. A., Pearson, L. H., Barry, E. L., Rees, J. R., Marcon, N., Saibil, F., Ueland, P. M., Greenberg, E. R., for the Polyp Prevention Study Group, (2007). Folic Acid for the Prevention of Colorectal Adenomas: A Randomized Clinical Trial. JAMA 297: 2351-2359 [Abstract] [Full Text]  
  • van den Donk, M., van Engeland, M., Pellis, L., Witteman, B. J.M., Kok, F. J., Keijer, J., Kampman, E. (2007). Dietary Folate Intake in Combination with MTHFR C677T Genotype and Promoter Methylation of Tumor Suppressor and DNA Repair Genes in Sporadic Colorectal Adenomas. Cancer Epidemiol. Biomarkers Prev. 16: 327-333 [Abstract] [Full Text]  
  • Shannon, K., Silverman, L. R. (2007). Myelodysplastic syndrome and overlap syndromes. ASH-SAP 2007: 228-242 [Full Text]  
  • Rai, K., Nadauld, L. D., Chidester, S., Manos, E. J., James, S. R., Karpf, A. R., Cairns, B. R., Jones, D. A. (2006). Zebra Fish Dnmt1 and Suv39h1 Regulate Organ-Specific Terminal Differentiation during Development.. Mol. Cell. Biol. 26: 7077-7085 [Abstract] [Full Text]  
  • Terranova, R., Agherbi, H., Boned, A., Meresse, S., Djabali, M. (2006). Histone and DNA methylation defects at Hox genes in mice expressing a SET domain-truncated form of Mll. Proc. Natl. Acad. Sci. USA 103: 6629-6634 [Abstract] [Full Text]  
  • Powers, H. J. (2005). Interaction among Folate, Riboflavin, Genotype, and Cancer, with Reference to Colorectal and Cervical Cancer. J. Nutr. 135: 2960S-2966S [Abstract] [Full Text]  
  • Fan, G., Martinowich, K., Chin, M. H., He, F., Fouse, S. D., Hutnick, L., Hattori, D., Ge, W., Shen, Y., Wu, H., ten Hoeve, J., Shuai, K., Sun, Y. E. (2005). DNA methylation controls the timing of astrogliogenesis through regulation of JAK-STAT signaling. Development 132: 3345-3356 [Abstract] [Full Text]  
  • Akahira, J.-i., Sugihashi, Y., Suzuki, T., Ito, K., Niikura, H., Moriya, T., Nitta, M., Okamura, H., Inoue, S., Sasano, H., Okamura, K., Yaegashi, N. (2004). Decreased Expression of 14-3-3{sigma} Is Associated with Advanced Disease in Human Epithelial Ovarian Cancer: Its Correlation with Aberrant DNA Methylation. Clin. Cancer Res. 10: 2687-2693 [Abstract] [Full Text]  
  • Suetake, I., Miyazaki, J., Murakami, C., Takeshima, H., Tajima, S. (2003). Distinct Enzymatic Properties of Recombinant Mouse DNA Methyltransferases Dnmt3a and Dnmt3b. J Biochem 133: 737-744 [Abstract] [Full Text]  
  • Yatsuki, H., Joh, K., Higashimoto, K., Soejima, H., Arai, Y., Wang, Y., Hatada, I., Obata, Y., Morisaki, H., Zhang, Z., Nakagawachi, T., Satoh, Y., Mukai, T. (2002). Domain Regulation of Imprinting Cluster in Kip2/Lit1 Subdomain on Mouse Chromosome 7F4/F5: Large-Scale DNA Methylation Analysis Reveals That DMR-Lit1 Is a Putative Imprinting Control Region. Genome Res 12: 1860-1870 [Abstract] [Full Text]  
  • Waki, T., Tamura, G., Tsuchiya, T., Sato, K., Nishizuka, S., Motoyama, T. (2002). Promoter Methylation Status of E-Cadherin, hMLH1, and p16 Genes in Nonneoplastic Gastric Epithelia. Am. J. Pathol. 161: 399-403 [Abstract] [Full Text]  
  • Choumenkovitch, S. F., Selhub, J., Bagley, P. J., Maeda, N., Nadeau, M. R., Smith, D. E., Choi, S.-W. (2002). In the Cystathionine {beta}-Synthase Knockout Mouse, Elevations in Total Plasma Homocysteine Increase Tissue S-Adenosylhomocysteine, but Responses of S-Adenosylmethionine and DNA Methylation Are Tissue Specific. J. Nutr. 132: 2157-2160 [Abstract] [Full Text]  
  • Choi, S.-W., Mason, J. B. (2002). Folate Status: Effects on Pathways of Colorectal Carcinogenesis. J. Nutr. 132: 2413S-2418 [Abstract] [Full Text]  
  • Silverman, L. R., Demakos, E. P., Peterson, B. L., Kornblith, A. B., Holland, J. C., Odchimar-Reissig, R., Stone, R. M., Nelson, D., Powell, B. L., DeCastro, C. M., Ellerton, J., Larson, R. A., Schiffer, C. A., Holland, J. F. (2002). Randomized Controlled Trial of Azacitidine in Patients With the Myelodysplastic Syndrome: A Study of the Cancer and Leukemia Group B. JCO 20: 2429-2440 [Abstract] [Full Text]  
  • Nguyen, C. T., Gonzales, F. A., Jones, P. A. (2001). Altered chromatin structure associated with methylation-induced gene silencing in cancer cells: correlation of accessibility, methylation, MeCP2 binding and acetylation. Nucleic Acids Res 29: 4598-4606 [Abstract] [Full Text]  
  • Aoki, A., Suetake, I., Miyagawa, J., Fujio, T., Chijiwa, T., Sasaki, H., Tajima, S. (2001). Enzymatic properties of de novo-type mouse DNA (cytosine-5) methyltransferases. Nucleic Acids Res 29: 3506-3512 [Abstract] [Full Text]  
  • Feng, Y.-Q., Lorincz, M. C., Fiering, S., Greally, J. M., Bouhassira, E. E. (2001). Position Effects Are Influenced by the Orientation of a Transgene with Respect to Flanking Chromatin. Mol. Cell. Biol. 21: 298-309 [Abstract] [Full Text]  
  • Grunau, C., Hindermann, W., Rosenthal, A. (2000). Large-scale methylation analysis of human genomic DNA reveals tissue-specific differences between the methylation profiles of genes and pseudogenes. Hum Mol Genet 9: 2651-2663 [Abstract] [Full Text]  
  • Singal, R., vanWert, J., Bashambu, M., Wolfe, S. A., Wilkerson, D. C., Grimes, S. R. (2000). Testis-Specific Histone H1t Gene Is Hypermethylated in Nongerminal Cells in the Mouse. Biol. Reprod. 63: 1237-1244 [Abstract] [Full Text]  
  • Steward, N., Kusano, T., Sano, H. (2000). Expression of ZmMET1, a gene encoding a DNA methyltransferase from maize, is associated not only with DNA replication in actively proliferating cells, but also with altered DNA methylation status in cold-stressed quiescent cells. Nucleic Acids Res 28: 3250-3259 [Abstract] [Full Text]  
  • MACHWE, A., ORREN, D. K., BOHR, V. A. (2000). Accelerated methylation of ribosomal RNA genes during the cellular senescence of Werner syndrome fibroblasts. FASEB J. 14: 1715-1724 [Abstract] [Full Text]  
  • Zhang, H., Xu, Y., Kamendulis, L. M., Klaunig, J. E. (2000). Morphological Transformation by 8-Hydroxy-2'-deoxyguanosine in Syrian Hamster Embryo (SHE) Cells. Toxicol Sci 56: 303-312 [Abstract] [Full Text]  
  • Morris, A. C., Spangler, W. E., Boss, J. M. (2000). Methylation of Class II trans-Activator Promoter IV: A Novel Mechanism of MHC Class II Gene Control. J. Immunol. 164: 4143-4149 [Abstract] [Full Text]  
  • Grunau, C., Schattevoy, R., Mache, N., Rosenthal, A. (2000). MethTools--a toolbox to visualize and analyze DNA methylation data. Nucleic Acids Res 28: 1053-1058 [Abstract] [Full Text]  
  • Lorincz, M. C., Schübeler, D., Goeke, S. C., Walters, M., Groudine, M., Martin, D. I. K. (2000). Dynamic Analysis of Proviral Induction and De Novo Methylation: Implications for a Histone Deacetylase-Independent, Methylation Density-Dependent Mechanism of Transcriptional Repression. Mol. Cell. Biol. 20: 842-850 [Abstract] [Full Text]  
  • Hmadcha, A., Bedoya, F. J., Sobrino, F., Pintado, E. (1999). Methylation-Dependent Gene Silencing Induced by Interleukin 1{beta} via Nitric Oxide Production. JEM 190: 1595-1604 [Abstract] [Full Text]  
  • Redner, R. L., Wang, J., Liu, J. M. (1999). Chromatin Remodeling and Leukemia: New Therapeutic Paradigms. Blood 94: 417-428 [Full Text]  
  • Singal, R., Ginder, G. D. (1999). DNA Methylation. Blood 93: 4059-4070 [Full Text]  
  • Araujo, F. D., Knox, J. D., Ramchandani, S., Pelletier, R., Bigey, P., Price, G., Szyf, M., Zannis-Hadjopoulos, M. (1999). Identification of Initiation Sites for DNA Replication in the Human dnmt1 (DNA-methyltransferase) Locus. J. Biol. Chem. 274: 9335-9341 [Abstract] [Full Text]  
  • Huber, R., Hansen, R. S., Strazzullo, M., Pengue, G., Mazzarella, R., D'Urso, M., Schlessinger, D., Pilia, G., Gartler, S. M., D'Esposito, M. (1999). DNA methylation in transcriptional repression of two differentially expressed X-linked genes, GPC3 and SYBL1. Proc. Natl. Acad. Sci. USA 96: 616-621 [Abstract] [Full Text]  
  • Hsieh, C.-L. (1999). Evidence that Protein Binding Specifies Sites of DNA Demethylation. Mol. Cell. Biol. 19: 46-56 [Abstract] [Full Text]  
  • Deng, J., Szyf, M. (1998). Multiple Isoforms of DNA Methyltransferase Are Encoded by the Vertebrate Cytosine DNA Methyltransferase Gene. J. Biol. Chem. 273: 22869-22872 [Abstract] [Full Text]  
  • Zhang, L. P., Stroud, J. C., Walter, C. A., Adrian, G. S., McCarrey, J. R. (1998). A Gene-Specific Promoter in Transgenic Mice Directs Testis-Specific Demethylation Prior to Transcriptional Activation In Vivo. Biol. Reprod. 59: 284-292 [Abstract] [Full Text]  
  • Fitzpatrick, D. R., Shirley, K. M., McDonald, L. E., Bielefeldt-Ohmann, H., Kay, G. F., Kelso, A. (1998). Distinct Methylation of the Interferon {gamma} (IFN-{gamma}) and Interleukin 3 (IL-3) Genes in Newly Activated Primary CD8+ T Lymphocytes: Regional IFN-{gamma} Promoter Demethylation and mRNA Expression Are Heritable in CD44highCD8+ T Cells. JEM 188: 103-117 [Abstract] [Full Text]  
  • Araujo, F. D., Knox, J. D., Szyf, M., Price, G. B., Zannis-Hadjopoulos, M. (1998). Concurrent Replication and Methylation at Mammalian Origins of Replication. Mol. Cell. Biol. 18: 3475-3482 [Abstract] [Full Text]  
  • Goto, T., Monk, M. (1998). Regulation of X-Chromosome Inactivation in Development in Mice and Humans. Microbiol. Mol. Biol. Rev. 62: 362-378 [Abstract] [Full Text]  
  • Clifford, C.P., Nunez, D.J.R. (1998). Human {beta}-myosin heavy chain mRNA prevalence is inversely related to the degree of methylation of regulatory elements. Cardiovasc Res 38: 736-743 [Abstract] [Full Text]  
  • Di Pietro, A., García-Maceira, F. I., Huertas-González, M. D., Ruíz-Roldan, M. C., Caracuel, Z., Barbieri, A. S., Roncero, M. I. G. (1998). Endopolygalacturonase PG1 in Different Formae Speciales of Fusarium oxysporum. Appl. Environ. Microbiol. 64: 1967-1971 [Abstract] [Full Text]  
  • Singal, R., Ferris, R., Little, J. A., Wang, S. Z., Ginder, G. D. (1997). Methylation of the minimal promoter of an embryonic globin gene silences transcription in primary erythroid cells. Proc. Natl. Acad. Sci. USA 94: 13724-13729 [Abstract] [Full Text]  
  • Zhao, C. Q., Young, M. R., Diwan, B. A., Coogan, T. P., Waalkes, M. P. (1997). Association of arsenic-induced malignant transformation with DNA hypomethylation and aberrant gene expression. Proc. Natl. Acad. Sci. USA 94: 10907-10912 [Abstract] [Full Text]  
  • Cimato, T. R., Ettinger, M. J., Zhou, X., Aletta, J. M. (1997). Nerve Growth Factor-specific Regulation of Protein Methylation during Neuronal Differentiation of PC12 Cells. JCB 138: 1089-1103 [Abstract] [Full Text]  
  • Huq, A.H.M. M., Sutcliffe, J. S., Nakao, M., Shen, Y., Gibbs, R. A., Beaudet, A. L. (1997). Sequencing and Functional Analysis of the SNRPN Promoter: In Vitro Methylation Abolishes Promoter Activity. Genome Res 7: 642-648 [Abstract] [Full Text]  
  • Ramchandani, S., MacLeod, A. R., Pinard, M., von Hofe, E., Szyf, M. (1997). Inhibition of tumorigenesis by a cytosine-DNA, methyltransferase, antisense oligodeoxynucleotide. Proc. Natl. Acad. Sci. USA 94: 684-689 [Abstract] [Full Text]  
  • Knofler, M., Krapp, A., Hagenbuchle, O., Wellauer, P. K. (1996). Constitutive Expression of the Gene for the Cell-specific p48 DNA-binding Subunit of Pancreas Transcription Factor 1in Cultured Cells Is under Control of Binding Sites for Transcription Factors Sp1 and alpha Cbf. J. Biol. Chem. 271: 21993-22002 [Abstract] [Full Text]  
  • Liang, F., Jasin, M. (1995). Studies on the Influence of Cytosine Methylation on DNA Recombination and End-joining in Mammalian Cells. J. Biol. Chem. 270: 23838-23844 [Abstract] [Full Text]  
  • Goldhamer, D., Brunk, B., Faerman, A, King, A, Shani, M, Emerson, C. (1995). Embryonic activation of the myoD gene is regulated by a highly conserved distal control element. Development 121: 637-649 [Abstract]  
  • Donoghue, M. J., Patton, B. L., Sanes, J. R., Merlie, J. P. (1992). An axial gradient of transgene methylation in murine skeletal muscle: genomic imprint of rostrocaudal position. Development 116: 1101-1112 [Abstract]  
  • Carlson, L L, Page, A W, Bestor, T H (1992). Properties and localization of DNA methyltransferase in preimplantation mouse embryos: implications for genomic imprinting.. Genes Dev. 6: 2536-2541 [Abstract]  
  • Kafri, T, Ariel, M, Brandeis, M, Shemer, R, Urven, L, McCarrey, J, Cedar, H, Razin, A (1992). Developmental pattern of gene-specific DNA methylation in the mouse embryo and germ line.. Genes Dev. 6: 705-714 [Abstract]  
  • Sanes, J.R., Donoghue, M.J., Wallace, M.C., Merlie, J.P. (1992). Rostrocaudal Differences among Muscles Revealed by a Transgene: Graded Expression at Low Copy Number. Cold Spring Harb Symp Quant Biol 57: 451-460 [Abstract]  
  • Lucarelli, M., Fuso, A., Strom, R., Scarpa, S. (2001). The Dynamics of Myogenin Site-specific Demethylation Is Strongly Correlated with Its Expression and with Muscle Differentiation. J. Biol. Chem. 276: 7500-7506 [Abstract] [Full Text]  
  • Singal, R., Wang, S. Z., Sargent, T., Zhu, S. Z., Ginder, G. D. (2002). Methylation of Promoter Proximal-transcribed Sequences of an Embryonic Globin Gene Inhibits Transcription in Primary Erythroid Cells and Promotes Formation of a Cell Type-specific Methyl Cytosine Binding Complex. J. Biol. Chem. 277: 1897-1905 [Abstract] [Full Text]  
  • Kalberer, C. P., Pawliuk, R., Imren, S., Bachelot, T., Takekoshi, K. J., Fabry, M., Eaves, C. J., London, I. M., Humphries, R. K., Leboulch, P. (2000). From the Cover: Preselection of retrovirally transduced bone marrow avoids subsequent stem cell gene silencing and age-dependent extinction of expression of human beta -globin in engrafted mice. Proc. Natl. Acad. Sci. USA 97: 5411-5415 [Abstract] [Full Text]  
  • Malone, C. S., Miner, M. D., Doerr, J. R., Jackson, J. P., Jacobsen, S. E., Wall, R., Teitell, M. (2001). CmC(A/T)GG DNA methylation in mature B cell lymphoma gene silencing. Proc. Natl. Acad. Sci. USA 98: 10404-10409 [Abstract] [Full Text]  
  • Ponger, L., Duret, L., Mouchiroud, D. (2001). Determinants of CpG Islands: Expression in Early Embryo and Isochore Structure. Genome Res 11: 1854-1860 [Abstract] [Full Text]