Linkage Map of Escherichia coli K-12, Edition 10: The Physical Map

This Article

	Full Text
	Full Text (PDF)
	Alert me when this article is cited
	Alert me if a correction is posted

Services

	Similar articles in this journal
	Similar articles in PubMed
	Alert me to new issues of the journal
	Download to citation manager
	Reprints and Permissions
	Copyright Information
	Books from ASM Press
	MicrobeWorld

Citing Articles

	Citing Articles via HighWire
	Citing Articles via Google Scholar

Google Scholar

	Articles by Rudd, K. E.
	Search for Related Content

PubMed

	PubMed Citation
	Articles by Rudd, K. E.

Microbiology and Molecular Biology Reviews, September 1998, p. 985-1019, Vol. 62, No. 3
1092-2172/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.

Linkage Map of Escherichia coli K-12, Edition 10: The Physical Map

Kenneth E. Rudd^*

Department of Biochemistry and Molecular Biology, University of Miami School of Medicine, Miami, Florida 33101-6129

A physical map, EcoMap10, of the now completely sequenced Escherichia coli chromosome is presented. Calculated genomic positionsfor the eight restriction enzymes BamHI, HindIII, EcoRI, EcoRV,BglI, KpnI, PstI, and PvuII are depicted. Both sequenced and unsequencedKohara/Isono miniset clones are aligned to this calculated restrictionmap. DNA sequence searches identify the precise locations of insertionsequence elements and repetitive extragenic palindrome clusters.EcoGene10, a revised set of genes and functionally uncharacterizedopen reading frames (ORFs), is also depicted on EcoMap10. Thecomplete set of unnamed ORFs in EcoGene10 are assigned provisionalnames beginning with the letter "y" by using a systematic nomenclature.

^* Mailing address: Department of Biochemistry and Molecular Biology (R-629), University of Miami School of Medicine, P.O. Box016129, Miami, FL 33101-6129. Phone: (305) 243-6055. Fax: (305)243-3955. E-mail: rudd{at}ecogene.med.miami.edu.

Microbiology and Molecular Biology Reviews, September 1998, p. 985-1019, Vol. 62, No. 3
1092-2172/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.

This article has been cited by other articles:

Kornberg, H., Lourenco, C. (2006). A route for fructose utilization by Escherichia coli involving the fucose regulon. Proc. Natl. Acad. Sci. USA 103: 19496-19499 [Abstract] [Full Text]
Riley, M., Abe, T., Arnaud, M. B., Berlyn, M. K.B., Blattner, F. R., Chaudhuri, R. R., Glasner, J. D., Horiuchi, T., Keseler, I. M., Kosuge, T., Mori, H., Perna, N. T., Plunkett, G. III, Rudd, K. E., Serres, M. H., Thomas, G. H., Thomson, N. R., Wishart, D., Wanner, B. L. (2006). Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res 34: 1-9 [Abstract] [Full Text]
Neylon, C., Kralicek, A. V., Hill, T. M., Dixon, N. E. (2005). Replication Termination in Escherichia coli: Structure and Antihelicase Activity of the Tus-Ter Complex. Microbiol. Mol. Biol. Rev. 69: 501-526 [Abstract] [Full Text]
Delgado, M. A., Vincent, P. A., Farias, R. N., Salomon, R. A. (2005). YojI of Escherichia coli Functions as a Microcin J25 Efflux Pump. J. Bacteriol. 187: 3465-3470 [Abstract] [Full Text]
Alcantara-Diaz, D., Brena-Valle, M., Serment-Guerrero, J. (2004). Divergent adaptation of Escherichia coli to cyclic ultraviolet light exposures. Mutagenesis 19: 349-354 [Abstract] [Full Text]
Buurman, E. T., McLaggan, D., Naprstek, J., Epstein, W. (2004). Multiple Paths for Nonphysiological Transport of K+ in Escherichia coli. J. Bacteriol. 186: 4238-4245 [Abstract] [Full Text]
Belin, P., Dassa, J., Drevet, P., Lajeunesse, E., Savatier, A., Boulain, J.-C., Menez, A. (2004). Toxicity-based selection of Escherichia coli mutants for functional recombinant protein production: application to an antibody fragment. Protein Eng Des Sel 17: 491-500 [Abstract] [Full Text]
Sibley, M. H., Raleigh, E. A. (2004). Cassette-like variation of restriction enzyme genes in Escherichia coli C and relatives. Nucleic Acids Res 32: 522-534 [Abstract] [Full Text]
Lanzov, V. A., Bakhlanova, I. V., Clark, A. J. (2003). Conjugational Hyperrecombination Achieved by Derepressing the LexA Regulon, Altering the Properties of RecA Protein and Inactivating Mismatch Repair in Escherichia coli K-12. Genetics 163: 1243-1254 [Abstract] [Full Text]
Milkman, R., Jaeger, E., McBride, R. D. (2003). Molecular Evolution of the Escherichia coli Chromosome. VI. Two Regions of High Effective Recombination. Genetics 163: 475-483 [Abstract] [Full Text]
Kofoid, E., Bergthorsson, U., Slechta, E. S., Roth, J. R. (2003). Formation of an F' Plasmid by Recombination between Imperfectly Repeated Chromosomal Rep Sequences: a Closer Look at an Old Friend (F'128pro lac). J. Bacteriol. 185: 660-663 [Abstract] [Full Text]
Schneider, B. L., Ruback, S., Kiupakis, A. K., Kasbarian, H., Pybus, C., Reitzer, L. (2002). The Escherichia coli gabDTPC Operon: Specific {gamma}-Aminobutyrate Catabolism and Nonspecific Induction. J. Bacteriol. 184: 6976-6986 [Abstract] [Full Text]
Snell, K. D., Feng, F., Zhong, L., Martin, D., Madison, L. L. (2002). YfcX Enables Medium-Chain-Length Poly(3-Hydroxyalkanoate) Formation from Fatty Acids in Recombinant Escherichia coli fadB Strains. J. Bacteriol. 184: 5696-5705 [Abstract] [Full Text]
Nagakubo, S., Nishino, K., Hirata, T., Yamaguchi, A. (2002). The Putative Response Regulator BaeR Stimulates Multidrug Resistance of Escherichia coli via a Novel Multidrug Exporter System, MdtABC. J. Bacteriol. 184: 4161-4167 [Abstract] [Full Text]
Kudva, I. T., Evans, P. S., Perna, N. T., Barrett, T. J., Ausubel, F. M., Blattner, F. R., Calderwood, S. B. (2002). Strains of Escherichia coli O157:H7 Differ Primarily by Insertions or Deletions, Not Single-Nucleotide Polymorphisms. J. Bacteriol. 184: 1873-1879 [Abstract] [Full Text]
McAteer, S., Coulson, A., McLennan, N., Masters, M. (2001). The lytB Gene of Escherichia coli Is Essential and Specifies a Product Needed for Isoprenoid Biosynthesis. J. Bacteriol. 183: 7403-7407 [Abstract] [Full Text]
SaiSree, L., Reddy, M., Gowrishankar, J. (2001). IS186 Insertion at a Hot Spot in the lon Promoter as a Basis for Lon Protease Deficiency of Escherichia coli B: Identification of a Consensus Target Sequence for IS186 Transposition. J. Bacteriol. 183: 6943-6946 [Abstract] [Full Text]
Gudapaty, S., Suzuki, K., Wang, X., Babitzke, P., Romeo, T. (2001). Regulatory Interactions of Csr Components: the RNA Binding Protein CsrA Activates csrB Transcription in Escherichia coli. J. Bacteriol. 183: 6017-6027 [Abstract] [Full Text]
Kobayashi, N., Nishino, K., Yamaguchi, A. (2001). Novel Macrolide-Specific ABC-Type Efflux Transporter in Escherichia coli. J. Bacteriol. 183: 5639-5644 [Abstract] [Full Text]
Bakhlanova, I. V., Ogawa, T., Lanzov, V. A. (2001). Recombinogenic Activity of Chimeric recA Genes (Pseudomonas aeruginosa/Escherichia coli): A Search for RecA Protein Regions Responsible for This Activity. Genetics 159: 7-15 [Abstract] [Full Text]
McCool, J. D., Sandler, S. J. (2001). Effects of mutations involving cell division, recombination, and chromosome dimer resolution on a priA2::kan mutant. Proc. Natl. Acad. Sci. USA 98: 8203-8210 [Abstract] [Full Text]
Wassarman, K. M., Repoila, F., Rosenow, C., Storz, G., Gottesman, S. (2001). Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev. 15: 1637-1651 [Abstract] [Full Text]
Schaechter, M., The View From Here Group, (2001). Escherichia coli and Salmonella 2000: the View From Here. Microbiol. Mol. Biol. Rev. 65: 119-130 [Abstract] [Full Text]
Guigueno, A., Dassa, J., Belin, P., Boquet, P. L. (2001). Oversynthesis of a New Escherichia coli Small RNA Suppresses Export Toxicity of DsbA'-PhoA Unfoldable Periplasmic Proteins. J. Bacteriol. 183: 1147-1158 [Abstract] [Full Text]
Sardesai, A. A., Gowrishankar, J. (2001). trans-Acting Mutations in Loci Other than kdpDE That Affect kdp Operon Regulation in Escherichia coli: Effects of Cytoplasmic Thiol Oxidation Status and Nucleoid Protein H-NS on kdp Expression. J. Bacteriol. 183: 86-93 [Abstract] [Full Text]
Miller, S., Ness, L. S., Wood, C. M., Fox, B. C., Booth, I. R. (2000). Identification of an Ancillary Protein, YabF, Required for Activity of the KefC Glutathione-Gated Potassium Efflux System in Escherichia coli. J. Bacteriol. 182: 6536-6540 [Abstract] [Full Text]
Guzzo, J., Dubow, M. S. (2000). A Novel Selenite- and Tellurite-Inducible Gene in Escherichia coli. Appl. Environ. Microbiol. 66: 4972-4978 [Abstract] [Full Text]
Xi, H., Schneider, B. L., Reitzer, L. (2000). Purine Catabolism in Escherichia coli and Function of Xanthine Dehydrogenase in Purine Salvage. J. Bacteriol. 182: 5332-5341 [Abstract] [Full Text]
Kozmin, S. G., Pavlov, Y. I., Dunn, R. L., Schaaper, R. M. (2000). Hypersensitivity of Escherichia coli Delta (uvrB-bio) Mutants to 6-Hydroxylaminopurine and Other Base Analogs Is Due to a Defect in Molybdenum Cofactor Biosynthesis. J. Bacteriol. 182: 3361-3367 [Abstract] [Full Text]
Sandt, C. H., Hill, C. W. (2000). Four Different Genes Responsible for Nonimmune Immunoglobulin-Binding Activities within a Single Strain of Escherichia coli. Infect. Immun. 68: 2205-2214 [Abstract] [Full Text]
Reddy, M., Gowrishankar, J. (2000). Characterization of the uup Locus and Its Role in Transposon Excisions and Tandem Repeat Deletions in Escherichia coli. J. Bacteriol. 182: 1978-1986 [Abstract] [Full Text]
Wei, B., Shin, S., LaPorte, D., Wolfe, A. J., Romeo, T. (2000). Global Regulatory Mutations in csrA and rpoS Cause Severe Central Carbon Stress in Escherichia coli in the Presence of Acetate. J. Bacteriol. 182: 1632-1640 [Abstract] [Full Text]
Gifford, C. M., Wallace, S. S. (2000). The genes encoding endonuclease VIII and endonuclease III in Escherichia coli are transcribed as the terminal genes in operons. Nucleic Acids Res 28: 762-769 [Abstract] [Full Text]
Niki, H., Yamaichi, Y., Hiraga, S. (2000). Dynamic organization of chromosomal DNA in Escherichia coli. Genes Dev. 14: 212-223 [Abstract] [Full Text]
Rudd, K. E. (2000). EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28: 60-64 [Abstract] [Full Text]
Corre, J., Patte, J., Louarn, J.-M. (2000). Prophage {lambda} Induces Terminal Recombination in Escherichia coli by Inhibiting Chromosome Dimer Resolution: An Orientation-Dependent cis-Effect Lending Support to Bipolarization of the Terminus. Genetics 154: 39-48 [Abstract] [Full Text]
Poulsen, T. S., Chang, Y.-Y., Hove-Jensen, B. (1999). D-Allose Catabolism of Escherichia coli: Involvement of alsI and Regulation of als Regulon Expression by Allose and Ribose. J. Bacteriol. 181: 7126-7130 [Abstract] [Full Text]
Magnet, S., Courvalin, P., Lambert, T. (1999). Activation of the Cryptic aac(6')-Iy Aminoglycoside Resistance Gene of Salmonella by a Chromosomal Deletion Generating a Transcriptional Fusion. J. Bacteriol. 181: 6650-6655 [Abstract] [Full Text]
Milkman, R., Raleigh, E. A., McKane, M., Cryderman, D., Bilodeau, P., McWeeny, K. (1999). Molecular Evolution of the Escherichia coli Chromosome. V. Recombination Patterns Among Strains of Diverse Origin. Genetics 153: 539-554 [Abstract] [Full Text]
Carolé, S., Pichoff, S., Bouché, J.-P. (1999). Escherichia coli Gene ydeA Encodes a Major Facilitator Pump Which Exports L-Arabinose and Isopropyl-beta -D-Thiogalactopyranoside. J. Bacteriol. 181: 5123-5125 [Abstract] [Full Text]
Mihara, H., Maeda, M., Fujii, T., Kurihara, T., Hata, Y., Esaki, N. (1999). A nifS-like Gene, csdB, Encodes an Escherichia coli Counterpart of Mammalian Selenocysteine Lyase. GENE CLONING, PURIFICATION, CHARACTERIZATION AND PRELIMINARY X-RAY CRYSTALLOGRAPHIC STUDIES. J. Biol. Chem. 274: 14768-14772 [Abstract] [Full Text]
Berlyn, M. K.�B. (1998). Linkage Map of Escherichia coli K-12, Edition 10: The Traditional Map. Microbiol. Mol. Biol. Rev. 62: 814-984 [Abstract] [Full Text]

Appl. Environ. Microbiol.	Infect. Immun.	Eukaryot. Cell
Mol. Cell. Biol.	J. Virol.	J. Bacteriol.
	ALL ASM JOURNALS