Microbiology and Molecular Biology Reviews, December 1998, p. 1021-1045, Vol. 62, No. 4
1092-2172/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Faculty of Pharmaceutical Sciences, Chiba University, 1-33 Yayoi-cho, Inage-ku, Chiba 263-8522, Japan
SUMMARY
INTRODUCTION
CATION TRANSPORT SYSTEMS
Proton ATPase
Molecular structure and genes.
Enzymatic properties.
Mechanism.
Physiological work.
Sodium Transport Systems
Na+/H+ antiporter.
Na+-ATPase.
(i) Discovery.
(ii) The sodium pump is a V-ATPase.
(iii) Catalytic properties.
(iv) Mechanism.
(v) Linkage with K+ movement.
(vi) Inducibility.
(vii) Comparison with other Na+-ATPases.
(viii) Distribution and evolution of V-ATPase.
Pathway of Na+ entry.
Physiological work.
Potassium Transport Systems
KtrI.
KtrII (NtpJ).
Potassium extrusion.
Additional potassium transport systems.
Physiological work.
Calcium Transport Systems
Calcium extrusion.
Calcium influx.
Physiological work.
Transport Systems for Other Cations
Copper ATPase.
(i) Structure.
(ii) Physiological work.
ENERGY TRANSDUCTION
ATP Production
Sugar metabolism.
Deiminase pathway.
Generation of the Proton Potential
Machinery.
Magnitude of the proton potential.
Utilization of the Proton Potential
Generation and Utilization of the Sodium Gradient
ROLE OF CATION TRANSPORT IN HOMEOSTASIS
Regulation of the Cytoplasmic pH
Acidic pH.
Alkaline pH.
Circulations of K+ and Na+ and Adaptation to the Environment
Is Cation Circulation Obligatory for Growth?
CONCLUDING REMARKS
ACKNOWLEDGMENTS
REFERENCES
SUMMARY
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Energy metabolism by bacteria is well understood from the chemiosmotic viewpoint. We know that bacteria extrude protons across the plasma membrane, establishing an electrochemical potential that provides the driving force for various kinds of physiological work. Among these are the uptake of sugars, amino acids, and other nutrients with the aid of secondary porters and the regulation of the cytoplasmic pH and of the cytoplasmic concentration of potassium and other ions. Bacteria live in diverse habitats and are often exposed to severe conditions. In some circumstances, a proton circulation cannot satisfy their requirements and must be supplemented with a complement of primary transport systems. This review is concerned with cation transport in the fermentative streptococci, particularly Enterococcus hirae. Streptococci lack respiratory chains, relying on glycolysis or arginine fermentation for the production of ATP. One of the major findings with E. hirae and other streptococci is that ATP plays a much more important role in transmembrane transport than it does in nonfermentative organisms, probably due to the inability of this organism to generate a large proton potential. The movements of cations in streptococci illustrate the interplay between a variety of primary and secondary modes of transport.
INTRODUCTION
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It is well established that bacteria conserve and transduce
metabolic energy by means of an electrochemical gradient of hydrogen ions across the cytoplasmic membrane (
µH+), in
accordance with the chemiosmotic theory of Peter Mitchell (168-171). According to this theory, extrusion of protons
via one primary transport system or another establishes a proton
potential. A primary transport system, or primary pump, is defined as
active transport directly linked to a metabolic reaction; examples
include electron transport by a redox chain, a proton-translocating
ATPase (Fig. 1), and a light-driven
reaction such as the photosynthetic reaction center and
bacteriorhodopsin (72-74). The electrochemical gradient of
protons
µH+ (proton potential,
p) across
the plasma membrane is the sum of two components, an electrical
potential (
, interior negative) and a pH gradient (
pH,
interior alkaline). The relationship of these parameters is described
by
p = 
Z
pH, where
pH is the difference between the pH of the bulk medium and that of the cytosol and the factor Z is 2.303RT/F
and is 59 mV at 25°C. The proton potential (proton motive force) can
then be used by the cells to drive proton-linked energy-consuming
processes. Most important, it is employed in the synthesis of ATP from
ADP and inorganic phosphate by the FOF1-ATP
synthase and in active transport by secondary transport systems which
are not associated with a concurrent chemical reaction. Porters perform
osmotic work by coupling the flux of one solute to that of another, for
example protons. The linkage of coupled fluxes with the same direction in space is called symport, and the linkage of those with the opposite
direction is called antiport (Fig. 1). Exergonic and endergonic
reactions are thus coupled via the circulation of protons across the
membrane (74, 78).
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The maintenance of a constant internal ion composition is indispensable to all living cells. Bacteria tend to maintain the cytoplasmic pH within a narrow range and to establish gradients of K+ and Na+ ions between their cytoplasm and the surrounding medium such that the cytoplasmic K+ concentration is higher than and the Na+ concentration is lower than that of the environment. It is accepted that secondary transport systems coupled to protons mediate the movements of K+ and Na+ ions. Proton movement across the membrane is the primary event not only for energy metabolism but also for performing this homeostatic work.
Microorganisms living in aquatic habitats are directly exposed to the outside world through a cell surface layer. Their habitats commonly encompass a wide range of physical conditions: oxygen, pH, salinity, temperature, light, etc. Bacteria that cannot cope with and survive in severe environments by depending on their H+-linked machinery alone have evolved a variety of ancillary energy conversion mechanisms. It is now recognized that Na+ ions supplement the role of protons in energy transduction across the bacterial membrane (154, 228). We know of diverse sodium pumps, such as (i) Na+-translocating membrane-bound decarboxylases in Klebsiella pneumoniae, Salmonella typhimurium, Veillonella alcalescens, Propionigenium modestum, etc. (45); (ii) Na+-translocating NADH oxidoreductase in various marine bacteria such as Vibrio alginolyticus (253); and (iii) the Na+-translocating ATPase in Enterococcus hirae, which is one of the topics of this review. All these generate an electrochemical gradient of sodium ions, which is used by the cells to drive secondary Na+-linked processes such as solute transport (122, 191, 254) and flagellar rotation (96, 101). In P. modestum, the Na+ gradient generated by the decarboxylation of organic acids is used for ATP synthesis by the Na+-ATPase (94, 155, 156). Alkaliphilic bacteria use an Na+ gradient as the driving force for solute transport and flagellar rotation at high pH (96, 101, 151, 152), when the proton concentration is too low. On the other hand, halorhodopsin functions as an electrogenic chloride pump in Halobacterium halobium, generating a membrane potential (221). These specialized energy-transducing systems are again very important for ion homeostasis in particular cases.
This article centers on cation transport in streptococci. The genus Streptococcus (70) is composed of gram-positive bacteria which occur as parasitic organisms in a wide variety of human, animal, and plant habitats (31). Streptococci are important in the dairy industry, as pathogens of animals and humans, and for their role in dental caries. Most are facultatively anaerobic, but some require additional carbon dioxide for growth and some are strict anaerobes. The metabolism of streptococci is fermentative, but nutritional requirements are complex and variable. The fundamental routes of energy metabolism run as follows. Glucose is taken up and phosphorylated to glucose-6-phosphate via the phosphoenolpyruvate-dependent phosphotransferase system (259); it is subsequently converted to pyruvate and finally to lactic acid by the glycolytic pathway. In these bacteria, which lack a respiratory chain (Fig. 1), ATP produced by substrate-level phosphorylation is hydrolyzed by the FOF1-ATPase with accompanying translocation of protons; the resulting proton potential is utilized for various proton-coupled transport reactions. It is noteworthy that among streptococci (Table 1), enterococci are particularly tolerant to external stresses including high temperature, high salt concentration, alkaline pH, and the presence of bile salts (70, 160). Lactococcus lactis is also known to be moderately tolerant to these factors. Facing harsh conditions such as high salinity and alkaline pH, enterococci and probably also L. lactis have evolved special energy conservation mechanisms for cation transport and homeostasis, which other streptococci may not have.
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E. hirae (formerly Streptococcus faecalis), which is found in the intestine of higher animals, proved to be a useful system for unraveling the energetics of active transport, particularly the role of the FOF1-ATPase in chemiosmotic energy transduction (79, 80, 84-86; for reviews, see references 71 to 73). First, E. hirae, like other streptococci, lacks respiratory chains. It can generate a proton potential only by the hydrolysis of ATP, effected by the proton-translocating FOF1-ATPase. Second, its simple metabolic pathways allow the precise calculation of ATP yields from the few compounds that it can metabolize, such as glucose and arginine. Third, the cells are easily depleted of energy, because the organism does not make energy reserve polymers. Finally, like other gram-positive organisms, it is sensitive to ionophores and inhibitors that act on the cell membrane. Because of these advantages, research related to inorganic cation transport processes has been carried out primarily with enterococci, although work on other species such as L. lactis (formerly Streptococcus lactis and Streptococcus cremoris) has recently begun to be published. In the past several years, a number of genes encoding transport proteins for cations have been isolated from streptococci, allowing characterization of these transport systems at the molecular level. One of the major findings with E. hirae and other streptococci is that ATP plays a much more important role in membrane transport than it does in nonfermentative organisms; streptococci are unable to generate a large proton potential because they lack respiratory chains (77). Streptococci cope with their limited proton potential by expressing a variety of primary transport systems. In this article, I review chiefly the recent developments in cation transport by E. hirae and supplement this information with what is known of other streptococci.
CATION TRANSPORT SYSTEMS
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Proton ATPase
The FOF1-ATPase is widely distributed in bacterial cell membranes. At the level of quaternary structure, the bacterial FOF1-ATPase is essentially identical to the ATPases of the inner membrane of mitochondria and of photosynthetic organelles in eukaryotic cells (36, 57, 105, 222). Its importance in membrane bioenergetics continues to be emphasized, although its universal distribution in bacterial membranes has been disproven; phylogenetically related proton ATPases of the vacuolar type replace FOF1-ATPase in archaebacteria (217) and in one eubacterium (268) (described below). All FOF1-ATPases are considered to be reversible, but physiologically the enzyme operates mainly or solely in one direction or the other. In mitochondria and respiring bacteria, the enzyme functions as an ATP synthase, mediating oxidative phosphorylation energized by the electrochemical gradient of protons (proton potential) via the respiratory chain. More than two decades ago, it was reported that some streptococci synthesize a cytochrome-like respiratory chain when the medium is supplemented with haematin (212); formation of ATP from ADP and inorganic phosphate, coupled to NADH oxidation, in cell extracts was also observed (33, 202). However, in most cases the streptococcal FOF1-ATPase does not function as ATP synthase, because of the lack of a functional H+-linked electron transport system (71, 75). In this organism, the FOF1-ATPase functions as a hydrolase and proton movements coupled to ATP hydrolysis are used for the generation of the proton potential (42, 84).
The E. hirae enzyme is of special interest because it was the first of the bacterial membrane ATPases to be discovered (9). The physiological role of streptococcal FOF1-ATPase is to alkalinize the cytoplasmic pH in the acidic pH range and to establish a proton potential as the driving force for a variety of secondary H+-linked transport systems and for H+-linked flagellar rotation in motile streptococci (165).
Molecular structure and genes.
As early as 1960, Abrams
et al. (9) detected an ATP hydrolytic activity in
E. hirae membranes. The enzyme purified from the
membranes (4, 219) was initially reported to consist of 12 subunits (220). However, further biochemical examination of this enzyme established that E. hirae
H+-ATPase belongs to the
FOF1-ATPase synthase complex found in oxidative phosphorylation membranes (10-12, 158). The enzyme consists
of two parts: F1, the catalytic moiety, contains five
subunits (
,
,
,
, and
), and the FO membrane
sector contains three subunits (a, b and c). A subunit stoichiometry
for the F1 moiety (
:
:
:
:
= 3:3:1:1:1), which
is very similar in all FOF1-ATPase complexes of
bacteria, is likely (3, 10-12, 158). The stoichiometry of the FO subunits is uncertain. The F1-ATPases in
S. mutans, S. sanguis (244),
and L. lactis subsp. cremoris (211)
have been purified. All these purified ATPases are five-subunit enzymes with molecular sizes corresponding to those of other
F1-ATPases. Final proof that streptococcal
H+-ATPase is an FOF1-ATPase was
provided by obtaining the amino acid sequences of all these subunit
molecules. First, a Russian group has chemically determined the amino
acid sequence of the N,N'-dicyclohexylcarbodiimide (DCCD)-binding
7-kDa proteolipid extracted with chloroform-methanol from plasma
membranes of E. hirae (148). This
proteolipid, consisting of 71 amino acid residues, was considered to be
the c subunit of the H+-ATPase because of the high degree
of homology to the corresponding c subunit of other bacterial
FOF1-ATPases. Inactivation of
H+-ATPase activity by DCCD is due to the covalent
modification of Glu54 in the second membrane segment of this
polypeptide chain.
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Enzymatic properties. The basic catalytic properties of the streptococcal H+-ATPase were worked out first for E. hirae (for reviews, see references 7 and 8) and recently for other streptococci. Each one of these streptococcal enzymes has special features. It is well known that azide is a specific inhibitor of F1-ATPase from various sources (60). The ATP hydrolytic activity of F1-ATPase from S. mutans and L. lactis subsp. cremoris is inhibited by azide (211, 244). By contrast, the E. hirae enzyme is insensitive to azide (3). Although the sensitivity of F1 to azide is not understood at the structural level (60), this feature is convenient to discriminate enterococci from many other streptococci and is exploited in the SF medium marketed by Difco.
S. pneumoniae H+-ATPase is uniquely sensitive to amino alcohol antimalarial reagents in the erythro configuration, such as optochin, quinine, and quinidine (55, 175). These compounds and related ones specifically inhibit the membrane-bound ATPase activity. There is good correspondence between the optochin (quinine)-sensitive and optochin (quinine)-resistant strains with respect to growth and membrane ATPase. The protein responsible for the optochin (quinine)-sensitive phenotype of S. pneumoniae has been identified as the proteolipid c subunit (66 amino acid residues) of the FOF1-ATPase (55). The optochin (quinine)-resistant isolates arose by point mutations in the atpC gene encoding the c subunit (Fig. 2) and produced different single-amino-acid changes: Gly20Ala, Met23Ile, Val48Leu, or Ala49Thr (175). These four residues would be closely juxtaposed within the membrane bilayer when the c subunit is folded and would be associated with the a and b subunits to form the FO complex (62). It is speculated that the interaction of these reagents with the c subunit causes a conformational change in FO, hindering the proper presentation of the H+ translocation pathway (57). The FOF1-ATPase of a dental plaque bacterium, S. mutans, is highly sensitive to fluoride (245). Isolated F1-ATPase of S. mutans was less sensitive to fluoride than was the FOF1-ATPase holoenzyme, suggesting that the FO moiety is involved in fluoride inhibition. Finally, the pH profile of the FOF1-ATPase is of particular importance to the physiology of streptococci; the activity has an optimum pH around 6.0 to 6.5 in E. hirae (144, 147) and S. mutans (24). On the other hand, the optimal pHs of ATPase from S. sanguis and S. salivarius are about 7.5 and 7.0, respectively (242). This difference is closely related to the physiological function of the streptococcal FOF1-ATPase as the generator of the proton potential and as regulator of the cytoplasmic pH, probably reflecting the acid tolerance of the former streptococci. The case of E. hirae FOF1-ATPase is discussed below. In contrast, the FOF1-ATPase complex of other oxidative organisms generally has a pH optimum above 7.5 (7); the pH optimum of purified E. coli F1 is around 9.5 (52).Mechanism.
The streptococcal H+-ATPase,
like other ATP synthases, is experimentally reversible; enterococcal
H+-ATPase (260) and L. lactis
H+-ATPase (161-163) can synthesize ATP when a
large proton potential (
200 mV) is artificially imposed. Because of
the lack of an energy-producing proton pump, such as an electron
transport system, these enzymes do not synthesize ATP under
physiological conditions. Ever since Mitchell proposed the chemiosmotic
concept of energy coupling (168, 169), there has been
vigorous debate over the linkage between proton flow and the ATPase
reaction (Fig. 1). The molecular mechanism of
FOF1-ATP synthase is not at issue in this
review. However, it is worthwhile mentioning just briefly the recent
fascinating progress in studies on the mechanism of the
FOF1-ATPase synthase with its three catalytic
sites in the F1 portion (Fig.
3) (29). A widely accepted
model for energy coupling by the ATP synthase, called the binding
change mechanism, has two features: (i) the major energy-requiring step
is not the synthesis of ATP at the catalytic site but, rather, its
release from that site, and (ii) tight binding of substrates and the
release of product occur simultaneously at separate but interacting
sites. It is evident from the negative cooperativity of sequential
nucleotide binding that the three catalytic sites are strongly coupled.
These catalytic sites may cycle in concert through the reaction. The
speculation is that the required binding change is coupled to proton
transport by rotation of a complex of subunits extending thorough
FOF1: "rotation catalysis" (Fig. 3)
(30). Based on the high-resolution structure of bovine
F1 (2), which verifies that each catalytic site
resides in a suitably different environment, this notion was strongly supported in biochemical (49) and spectroscopic
(216) studies by independent groups. Very recently,
Yoshida's group directly visualized rotation of the F1
molecule (183); attachment of a fluorescent actin filament
to the
subunit served as a marker, which enabled them to observe
this motion directly. Thus, the FOF1-ATPase is
a complex that may be considered a machine, and this is best emphasized
by explicit analogy to electrical motors and chemical engines; the next
exciting discovery will be in the FO sector, i.e., how
rotation within the FO subunit is coupled to H+
flow.
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Physiological work.
Generation of the proton potential
is one of the major functions of the streptococcal
FOF1-ATPase; this is subsequently utilized by
means of secondary H+-coupled transport systems, in accord
with the chemiosmotic viewpoint (71-75). The magnitude of
the proton potential is affected by several factors: the proton
conductance of the cell membrane and the permeability of the membrane
to charged molecules and to ions. Furthermore, it is also affected by
cellular activities related to growth. L. lactis cells
glycolyzing in a buffer at pH 6 maintained a proton potential of
160
mV, while that of growing organisms was only
140 mV (128).
The difference possibly results from the partial consumption of the
proton potential by various H+-coupled transport systems.
The maximum size of the proton potential generated in enterococci is
almost
130 to
150 mV at acidic pH (144). With regard to
the uptake of metabolites, if we assume symport of a metabolite with
one proton, a proton potential of
180 mV would suffice to sustain a
concentration gradient of 103 while
240 mV would support
a gradient of 104 (214); physiological gradients
of transport substrates fall within this range. On the other hand, at
alkaline pH, the H+-ATPase activity is minimal and the
proton potential is too low for adequate accumulation of solutes by
H+-linked porters (110). This leads one to
expect the evolution of various primary transport pumps to supplement
the H+-linked secondary ones.
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subunit of the
H+-ATPase at an alkaline pH; degradation of the subunit may
decrease the level of functional enzyme. Thus, the regulatory step for the functional H+-ATPase level is probably at the
posttranscriptional level. It may be speculated that the amount of
functional H+-ATPase in the membrane is regulated at
multiple levels: synthesis, assembly, and turnover (142). We
conclude that changes in the amount of functional H+-ATPase
are essential to the regulation of cytoplasmic pH in acidic media
(141), but the mechanism is not simple and is still unclear.
Sodium Transport Systems
Bacteria actively extrude sodium ions and maintain the electrochemical concentration gradient of sodium directed inward. The significance of the sodium gradient in bacteria is well known (73, 74, 154, 228); the sodium current is frequently linked with cotransport systems (191) and can serve as the driving force for flagellar rotation (101). In marine bacteria, a variety of transport systems are linked to Na+ rather than H+ (122, 254); in this case, the sodium circulation is primary rather than supplemental to the proton circulation. The mechanism of sodium extrusion is generally thought to be secondary antiport of sodium ions for protons, energized by the proton potential, just as Mitchell envisaged (71, 72, 169, 171). However, the activity of the Na+/H+ antiporter is supplemented by a variety of primary transport systems energized by ATP hydrolysis, redox potential, or decarboxylation. Sodium transport in streptococci has been extensively studied in E. hirae (241). In this bacterium, the investigation of sodium transport grew out of Mitchell's antiport hypothesis but now illustrates the interplay between the primary and secondary modes of energy-linked transport (77).
Na+/H+ antiporter. Harold and his colleagues contributed fundamental information on Na+ transport in E. hirae. Early studies on Na+ transport in E. hirae were interpreted as providing support for a Na+/H+ antiporter driven by the proton potential. Sodium extrusion from the cells against the Na+ gradient was blocked by DCCD, an inhibitor of the proton-translocating FOF1-ATPase, suggesting that sodium efflux requires a proton potential. Furthermore, H+ influx accompanying Na+ efflux was observed in alkalinized Na+-loaded cells metabolizing in Na+-free buffer. In this experiment, the driving force for Na+ efflux was presumably the Na+ gradient directed outward, since DCCD prevented establishment of the proton potential (80). These findings provided the first confirmation of the proposal that bacteria contain an Na+/H+ antiporter (264). For some years, this antiporter activity was held to be an artifact connected with the newly discovered Na+-translocating ATPase (for details, see references 88 and 114). Briefly, the hypothesis was that the Na+ pump of E. hirae catalyzes an ATP-driven exchange of H+ for Na+. The antiporter activity, visible only in membrane vesicles or in a mutant deficient in the Na+ pump, was considered to be the antiporter moiety of a modular ATP-driven exchanger of Na+ for H+ (83, 89, 91). This interpretation, however, proved incorrect. In the wild-type strain cultured on Na+-limited medium, in which the Na+-inducible Na+-ATPase level was minimal, the Na+/H+ antiport activity was clearly observed (108). In response to an artificially imposed pH gradient (with exterior acid), energy-depleted cells exhibited a transient sodium extrusion which was unaffected by treatments that dissipated the membrane potential but was blocked by proton conductors. One must conclude that E. hirae has two separate Na+ extrusion systems: an Na+-ATPase and an Na+/H antiporter.
Mutant 7683, which is totally negative in sodium-extruding activity, was unable to grow in high-Na+ medium (83). The E. hirae Na+/H+ antiporter gene, napA, was cloned by screening for the recovery of growth of this mutant at high Na+. This gene encodes a 42-kDa hydrophobic polypeptide having 12 putative membrane-spanning regions, like most other secondary porters (263). Everted vesicles of strain WD4, in which the napA gene is disrupted, did not show uptake of 22Na+ in response to a proton potential. When the napA gene was expressed in E. coli, NapA-dependent, Na+-coupled H+ flux was observed (240). The amino acid residues conserved in various Na+-linked secondary transporters were also found in the amino acid sequence of the NapA protein (191), although their significance in the molecular mechanism is unclear. However, from the standpoint of the evolution of cation porters, it is noteworthy that the overall sequence of NapA was highly similar to that of E. coli KefC K+ efflux protein rather than to that of the NhaA Na+/H+ antiporter of E. coli (210). NapA recognizes Li+ as well as Na+ as the substrate. It has been considered that the Na+/H+ antiporter may be constitutive, because full Na+/H+ antiporter activity was observed even in Na+-limited media (less than 1 mM Na+). However, Solioz's group now suggests that the amount of the NapA protein is regulated at the transcriptional level, responding to the concentration of Na+ as well as Li+ in the medium (238). Although no one doubts the ubiquitous distribution of Na+/H+ antiporters in bacteria, it has not so far been reported in other streptococci. E. coli contains three Na+/H+ antiport systems, NhaA, NhaB, and ChaA; they differ from one another in activity, optimal pH, and inducibility (192). We also have no information about multiplicity of Na+/H+ antiporters in streptococci.Na+-ATPase.
(i) Discovery. Although most of the early data on Na+ extrusion by E. hirae cells fit the sodium/proton antiport model, there was one important observation which could not be easily explained by this model: net Na+ movement and 22Na+-Na+ exchange were seen only in cells capable of generating ATP (80). The search for an answer to this question led to the discovery of the sodium-translocating ATPase in E. hirae. Sodium extrusion against a concentration gradient, under conditions such that the proton potential has been totally dissipated by the presence of DCCD or protonophores and valinomycin, was readily induced by the addition of glucose or arginine. Since the energy donor common to the metabolism of glucose and arginine is ATP, Na+ extrusion was attributed to an ATP-driven Na+ pump (89). ATP-driven 22Na+ uptake and Na+-stimulated ATP hydrolysis were observed in everted membrane vesicles in the presence of DCCD and the ionophores (90). No Na+-pumping activity was detected in vesicles of mutant 7683 (83); this mutant is now considered to be a double mutant defective in both Na+-ATPase and the Na+/H+ antiporter (114, 232). All these results suggest that a Na+-translocating ATPase exists in the cell membrane of E. hirae, which was the first bacterium in which a Na+-ATPase was discovered. Na+ movements unconnected to a proton potential have recently been reported in S. bovis (241); an Na+-ATPase is likely to be responsible.
(ii) The sodium pump is a V-ATPase.
Ion-motive
ATPases are divided into two categories: one which forms
phosphorylated intermediates (E-P enzyme; P-ATPase) and the other
which does not. P-ATPases are exemplified by the
Na+,K+-ATPase,
H+,K+-ATPase and
Ca2+-ATPase of higher organisms and by a variety of
ion-translocating ATPases in bacteria (194, 195). The
ATPases which do not form E-P intermediates are now divided into
two types: FOF1-ATPase (F-ATPase) and
vacuolar ATPase (V-ATPase). F-ATPase functions as an
ATP synthase in oxidative bacterial membranes and as the proton
pump in the membranes of fermentative bacteria such as streptococci. On
the other hand, the V-ATPase is known as the proton pump of acidic
organelles, such as the vacuoles of fungi and plants and various
endosomes of animal cells (58, 180, 181). Archaebacteria
contain a V-ATPase, which is believed to mediate ATP synthesis
(217). Both ATPases are quite similar multisubunit enzymes consisting of a hydrophilic catalytic portion (F1
and V1, respectively) and a membrane-embedded portion
(FO and VO). The proteolipid of the membrane
sector, which contains a DCCD-reactive acidic amino acid residue, is
thought to be the pathway by which protons cross the membrane. However,
a stretch of the sequence (about 90 amino acid residues) is commonly
conserved in the N-terminal region of the V-ATPase A subunit but is
not found in the sequence of the
subunit of E. coli
F-ATPase. The size of the eukaryotic V-ATPase proteolipid is
generally 16 to 17 kDa and is thought to have arisen by tandem
duplication of the 7- to 8-kDa c subunit gene of the F-ATPase
(164). The high homology between the amino acid sequences of
several major subunits of these ATPases suggests a close
evolutionary relationship between them (66, 164, 181, 182).
The V-ATPase has been called a "big sister" of the
F-ATPase (14).
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(iii) Catalytic properties. The activity of E. hirae Na+-ATPase is maximal at pH 8.5 to 9.0 but not detectable at pH 6.0; the pH profile of ATPase activity fits its importance to the physiology of this bacterium at alkaline pH, as described below. This ATPase is stimulated by Na+ or Li+ ions but not by K+ and Ca2+ ions. The ATP hydrolytic activity of the purified VOV1 enzyme absolutely requires Na+; the kinetics of ATP hydrolysis showed at least two different affinities for Na+ (Km values of 20 and 4 mM), and probably one more. These different Na+ affinities of the ATPase are definitely linked to its mechanism, but their meaning remains unsolved. The affinity of this enzyme for ATP is 0.5 mM for both the purified enzyme and the membrane-bound form (115, 177).
E. hirae Na+-ATPase was initially proposed to be insensitive to DCCD (89-91). However, it is now clear that the activity of Na+-ATPase is specifically inhibited by this reagent (177); a glutamic acid residue (Glu139) in the NtpK proteolipid of the complex is probably covalently modified by DCCD. Why did the activity of the enzyme appear to be insensitive to DCCD? The trick is the fact that the reaction of DCCD with the Na+-ATPase is blocked by the coupling ions Na+ and Li+ (138). Na+ and Li+ ions compete with the attack of DCCD. In all previous experiments in which DCCD-insensitive 22Na+ extrusion activity was observed, this reagent, blocking the generation of the proton potential by the H+-ATPase, was added after the cells or vesicles had been loaded with sodium ions. No proton potential-independent Na+ extrusion was observed when DCCD was added before Na+ loading. It was just an unexpected bit of luck in the history of Na+-ATPase in enterococci. The macrolide antibiotic bafilomycin A1 is a well-known inhibitor of V-ATPases (28) and probably attacks the VO portion of the eukaryotic enzymes (271). However, the effect of this antibiotic on bacterial V-ATPase was insignificant. Concanamycin A, another macrolide antibiotic, did not inhibit E. hirae Na+-ATPase when used at 5 µM. Recently it was shown that two proteolipid subunits, Vma11p and Vma16p, are also essential for the activity and assembly of yeast V-ATPase (95). More than 13 subunits make up yeast V-ATPase, and the same is probably true for Caenorhabditis elegans (190). The structures of bacterial V-ATPase and eukaryotic V-ATPase are homologous, but their fine structures are distinct, probably resulting in their differential sensitivity to antibiotics. Destruxin B, a peptide antibiotic which may attack the V1 catalytic portion of V-ATPase (179), is as effective with E. hirae Na+-ATPase as with the eukaryotic enzyme. The effect of nitrate on eukaryotic V-ATPase is attributed to its chaotropic property; the V1 catalytic moiety is detached and dissociated from the VO membrane sector (173, 207, 258). E. hirae Na+-ATPase and archaebacterial V-ATPase (1) are also inhibited by nitrate, but inhibition occurs at a much lower concentration and is probably not chaotropic. E. hirae Na+-ATPase is inhibited by NEM, but the Ki value (0.15 mM) is higher than the micromolar amounts required by eukaryotic V-ATPase. It has been proposed that the cysteine residue in the Walker A motif (GlyXXXCysGlyLysThr), commonly conserved in the A subunit of eukaryotic V-ATPase, is attacked by sulfhydryl reagents (54). The corresponding amino acid residue in E. hirae Na+-ATPase is alanine (Ala236) of the NtpA subunit. Replacement of the Ala236 by cysteine greatly enhanced the sensitivity of the Na+-ATPase to NEM (247).(iv) Mechanism.
There must be common principles in the
energy-transducing machinery of V-ATPase and F-ATPase
molecules. It is likely that in both cases, energy transfer from
ATP hydrolysis calls for three catalytic sites on the
V1 moiety and an ion-translocating pathway through the
VO proteolipid (133). The rotation catalysis
mechanism, experimentally verified for the F-ATPase, is
probably applicable to the V-ATPase (Fig. 3). Which subunit of
the V-ATPase does rotate, as does the
subunit of
F-ATPase? The most likely candidate is the D subunit, even
though its sequence similarity to
is minimal. The reason is that
the D subunit makes up the core of the V1 complex, together
with A and B subunits, in purified V1 (119,
268).
(v) Linkage with K+ movement. Before finding the structural information on the Na+-ATPase by gene cloning, Harold and I suggested that this ATPase may be a Na+(K+)-ATPase (112). Potassium uptake via the KtrII K+ transport system is somehow linked to the Na+-ATPase, which, in intact cells, expels Na+ ions by exchange for K+. Moreover, the ntpJ gene, which is known to encode the K+ uptake capacity of the transport system, is cotranscribed with other subunits of the Na+-ATPase (Fig. 6A) (178). However, the NtpJ protein is separable from the Na+-ATPase complex by centrifugation of the solubilized fraction (177). Moreover, strain JEM2, in which the ntpJ gene has been disrupted (and which lacked K+ uptake), still contained normal Na+-ATPase (176). It therefore appears that the KtrII K+ uptake system is not mechanically linked with the Na+-ATPase complex; the K+/Na+ exchange model of this enzyme should be considered withdrawn.
(vi) Inducibility. In 1984, Kinoshita et al. (136) reported that the Na+-ATPase level of E. hirae is not constant. They measured the Na+-stimulated ATPase in mutant AS25, deficient in the H+-ATPase, and observed much higher levels of Na+-ATPase in this mutant than those found by Heefner and Harold (90) in the wild type. Moreover, both the rate of sodium transport by intact cells and the activity of Na+-ATPase in vesicles were altered by the culture conditions. Mutant cells grown in high-Na+ (0.12 M) media exhibited high activities, while those grown in low-Na+ (5 to 10 mM) media exhibited much lower enzymatic and transport activities. Sodium transoort and Na+-ATPase activity in the wild-type strain were much lower than those in the mutant strain. When the wild-type cells were grown in the presence of a protonophore, carbonyl cyanide m-chlorophenylhydrazone (CCCP), both Na+ transport and Na+-ATPase activity were elevated. Furthermore, when the wild-type cells were grown at alkaline pH, both activities increased significantly (115). The sodium ATPase is thus induced when cells are grown on media rich in sodium, particularly under conditions that limit the generation of a proton potential, indicating that an increase in the cytoplasmic sodium level serves as the signal. Western blotting and Northern blotting experiments revealed substantial correlation between the amount of this enzyme and expression of the ntp operon (178). Even when the cells were grown on low-Na+ medium, the ionophores monensin and gramicidin D, which render the membrane permeable to Na+, significantly increased the amounts of Na+-ATPase and of the mRNAs for the operon (178). All these data are explained by the hypothesis that the Na+-ATPase is induced at the transcriptional level by an increase in the cytoplasmic Na+ concentration. In E. coli, transcriptional regulation of the nhaA Na+/H+ antiporter gene, responding to Na+ and Li+ ions (193), is achieved by the NhaR regulatory protein, which is a member of the LysR protein family (203). The next step for understanding the regulation of the ntp operon, in concert with that of the napA antiporter gene (238), is to discover the system that senses the Na+ concentration.
(vii) Comparison with other Na+-ATPases. Whether a vacuolar-type Na+-ATPase occurs in other streptococci is not clear. Based on their tolerance to salinity and alkaline pH, some related streptococci such as L. lactis and S. bovis appear to possess a Na+-ATPase, although it may be less prominent. We have already found that everted membrane vesicles of L. lactis contain a Na+-stimulated ATPase; reactions with antibodies directed against components of the E. hirae enzyme suggest the presence of homologs to NtpA and NtpB (124). An Na+-translocating ATPase, recently discovered in the thermophilic Clostridium fervidus (237), is very likely to be of the vacuolar type as judged by the enzymatic and biochemical properties of the purified enzyme (97). Furthermore, the enzymatic features of an Na+-stimulated-ATPase observed in Mycoplasma mycoides (a parasitic glycolytic organism) are virtually identical to those of the E. hirae enzyme (25), and an Na+-stimulated ATPase from Acholeplasma laidlawii seems to be of the V type as judged by its subunit composition (104, 159).
On the other hand, the electrogenic Na+-ATPases found in P. modestum, Acetobacterium woodii (208), Methanosarcina mazei (23) and other organisms belong to the F-ATPase class. It is proposed that these ATPases perform ATP synthesis, energized by the Na+ gradient generated by a metabolic sodium pump. The P. modestum Na+-ATPase has contributed powerfully to analysis of the mechanism of F-ATPases (107, 138, 155-157). To date, no P-type Na+-ATPase has been found in bacteria.(viii) Distribution and evolution of V-ATPase. In the prokaryotic world, V-ATPases were first found in archaebacteria but are now known to be distributed among eubacteria such as E. hirae and Thermus thermophilus (268). Sequencing and characterization of the genes encoding the H+-translocating V-ATPases of other bacteria (266) suggest that all these enzymes consist of nine subunits, identical to the number for the E. hirae Na+-ATPase. We have found that nine open reading frames in the genome of Methanococcus jannaschii (35) correspond to individual ntp genes for the E. hirae Na+-ATPase subunits (248, 249), although the ion specificity of this putative V-ATPase is unknown. In these V-ATPase clusters, the order of the subunit genes is almost always the same. The Sulfolobus acidocaldarius V-ATPase operon is slightly different; the operon consists of only six genes (43). Since the whole subunit structure of Sulfolobus ATPase is unsettled, unidentified subunits may be encoded on separate genes.
E. hirae is the organism that has clearly proved that functional F- and V-ATPases can coexist on the same plasma membrane; there is no particular similarity between the subunits of these ATPases found in the same organism. Coexistence of V- and F-ATPases in a single bacterial cell is no longer exceptional. Both ATPases are also present in Methanosarcina mazei (23, 266); in this bacterium, an F-ATPase transports Na+ and a V-ATPase transports H+. Recent analyses by PCR have suggested that various eubacteria containing F-ATPase also possess genes similar to those for V-ATPase and that the archaebacterium Methanosarcina barkeri, in which V-ATPase functions, possesses an F-ATPase-like gene (243). It will be interesting to learn whether functional ATPases are encoded by these genes. V-ATPase and F-ATPase exhibit similar structural features, and they are evolutionarily distantly related (66, 164, 181, 182); the A and B subunits of V-ATPase and the
and
subunits of F-ATPase are similar to each other, and the
16- to 17-kDa proteolipids of the eukaryotic V-ATPase and
E. hirae Na+-ATPase are likely to be
tandem duplications of the c subunit gene of the F-ATPase
(164). Phylogenetic analysis of the homologous ATPase
subunits sustains rigorous argument about ATPase evolution, but no
firm conclusions have been reached (26, 92). However, it is
believed that V-ATPase diverged from F-ATPase
relatively early in evolution (182). It seems to me that the
development of V-ATPase occurred between the archaeal and
eukaryotic domains. Following extensive divergence of V-ATPases
from F-ATPases, the archaea diverged from the
"proeukaryotes." Only in the proeukaryotic lineage, prior to the
diversification of eukaryotes, did the tandem intragenic duplication of
the c subunit occur. These genes may subsequently have been acquired by
bacteria as a result of horizontal transmission of the ATPase
genes. Among them, some species may have lost the gene for one of these
ATPases, or at least the capability of its expression. A few
organisms have retained the capability of expressing the genes for both
ATPases (26, 92); one of these ATPases apparently
underwent alteration of cation specificities, i.e., Na+
instead of H+, presumably in the course of adaptation to
the environment.
The archaebacterial V-ATPase proteolipids so far reported
clearly did not result from duplications of the c subunit gene of the
F-ATPase (44). They are smaller than eukaryotic
proteolipids. The significance of the proteolipid size in
archaebacterial ATPase is obscure, but it is speculated that the
F-ATPase proteolipid-like size may be relevant to the role of
archaebacterial ATPase as an ATP synthase, not a proton pump
(217).
Pathway of Na+ entry. At least one route for Na+ entry must exist, since a Na+ circulation is important for the growth of streptococci. The nature of this pathway is still unknown. The limited data at hand suggest that the Na+/H+ antiporter mentioned above may allow Na+ ions to enter cells whose membrane potential has been collapsed (108, 114). A different pathway was observed by Heefner and Harold (89), who showed that when a membrane potential (inside negative) was imposed by K+ efflux, the cells took up Na+ ions by exchange for K+. The process involved has low affinity but high capacity (Km > 20 mM; Vmax > 50 nmol/min/mg of cells) and apparently responds to both the concentration gradient and the electrical potential. Because of its low affinity, we suspect that this pathway is relatively nonspecific and reflects some kind of leakage down the electrochemical potential gradient.
Physiological work. Like all other living cells, streptococci exclude Na+ ions and accumulate K+ ions. There is no simple answer to the question why cells expend energy on generating this ion gradient. Generation of a sodium gradient is an essential aspect of any sodium circulation. The reason for the obligatory role of sodium circulation in streptococci is not evident, except for the accumulation of K+ at alkaline pH, which is somehow linked to Na+ extrusion. Na+-dependent secondary transport has been reported only for S. bovis (215). There is also a body of evidence to suggest that a high Na+ concentration in the cytoplasm is generally inhibitory to cell physiology, although specific targets have not been identified (83). On the other hand, it has long been known that K+ ions are the major cations specifically required for protein synthesis.
E. hirae 7683, a mutant totally defective in sodium extrusion, was unable to grow at any pH in K+-limited, high-Na+ medium; by contrast, in Na+-limited, high-K+ medium, the mutant grew nearly as well as the wild-type strain did (83). Although the activities of the H+-ATPase and of the major K+ uptake system, KtrI, were normal, sodium-loaded cells of the mutant failed to accumulate K+; all the intracellular anions were occupied by Na+ ions, which could not be expelled. However, growth of the mutant cells resumed when the K+/Na+ ratio of the medium was increased; under those conditions, the intracellular K+/Na+ ratio rose concomitantly. The wild-type strain behaved likewise in Na+-rich medium in the presence of gramicidin D (Fig. 4); here again, the effect of the ionophore was a function of the K+/Na+ ratio in the medium. It is clear that one substantial role of sodium extrusion is to make room for K+ ions. This task is very simple but important in homeostasis. In high-Na+ medium, a mutant lacking the Na+-ATPase activity did not grow at alkaline pH; growth at acidic pH was normal (Fig. 4B). The Na+-ATPase is indispensable for Na+ extrusion at alkaline pH, but at acidic pH the Na+/H+ antiporter compensates for its absence. On the other hand, the pH profile of growth of the napA-disrupted strain WD4 in high-Na+ medium did not differ from that of growth of the parent strain (134). The NapA function (Na+/H+ antiport) is dispensable for the physiology of E. hirae, even in high-Na+ medium, at any pH. Regulation of the Na+-ATPase level compensates for any deficiency in NapA, even at acidic pH (134). It has been suggested that the Na+/H+ antiporter plays an important role, not only in sodium extrusion but also in cytoplasmic acidification at alkaline pH (152, 192). The effect depends on proton influx via the Na+/H+ antiporter in response to the membrane potential. However, this proposal cannot apply to E. hirae, since the napA mutant grows well at alkaline pH when the membrane potential is minimal. Cytoplasmic acidification in E. hirae depends on another system, a K+/H+ antiporter pump.Potassium Transport Systems
Potassium is the major intracellular cation for all living cells from animals to microorganisms. Intracellular K+ concentrations are kept in the range of 0.1 to 0.5 M in E. coli and Salmonella typhimurium and 0.4 to 0.6 M in E. hirae; the K+ concentrations remain high even when extracellular concentrations drop to starvation levels. Maintaining the intracellular K+ level requires several parallel potassium transport systems (17). Investigation of bacterial K+ transport is most advanced in E. coli and is founded on powerful genetics and molecular biology. A number of separate K+ transport systems are thought to occur in E. coli (51); the two three-component TrkG and TrkH systems and the one-component Kup system are constitutively expressed, while the three-component Kdp-ATPase system is derepressed under conditions of K+ starvation or osmotic upshock (153). In addition, there are two transport pathways for K+ efflux in E. coli: KefB and KefC (20, 56). These efflux systems are regulated by glutathione; whether they operate as porters or channels is currently being examined.
E. hirae possesses two K+ uptake systems, KtrI and KtrII, and one extrusion system, here designated Kep (K+ extrusion pump). KtrI appears similar to the Trk system of E. coli, but the other two systems show unique features not seen in other bacteria. The molecular characterization of these K+ transport systems in enterococci has just been initiated.
KtrI.
The KtrI system is the major potassium uptake
pathway under most conditions; it has a pH optimum near 7 and an
apparent Km of about 0.2 mM, and it attains a
maximal rate of about 70 nmol of K+ min
1 mg
of cells
1. This rate is comparable to the rate of
glycolysis (100 to 150 nmol of lactate min
1 mg of
cells
1), and under certain conditions cells do take up
K+ at a rate that approaches their overall metabolic rate.
KtrI also transports Rb+ with kinetics similar to those of
K+, and it appears to be constitutive. An early observation
that the rates of K+ and Rb+ uptake via this
system increased in E. hirae grown on
K+-deficient medium may reflect an increased activity of
the F-type H+-ATPase in such a medium, as described
above (6). There is no clear evidence for activation of KtrI
activity by a change in turgor pressure or in the osmotic pressure of
the medium.
150 mV and is often much lower under
physiological conditions, suggesting that the cellular K+
pool cannot simply be in electrochemical equilibrium with the membrane potential.
That KtrI has a requirement for metabolic energy was inferred from
experiments in which a membrane potential was imposed artificially by
shifting the pH in the presence of a protonophore. DCCD was present in
these experiments to block the H+-ATPase and thus
prevent the generation of a proton potential by ATP hydrolysis.
When a membrane potential alone was imposed, K+ uptake was
insignificant. There was somewhat greater K+ uptake when
glucose was present and the protonophore was omitted. A high rate of
K+ uptake was induced when both glucose and a protonophore
were present. The requirement for glucose shows that some metabolic product, possibly ATP, is required for KtrI. Thus, K+
uptake by KtrI requires the cells to generate both ATP and a membrane potential. Since potassium uptake depolarizes the cells, it is
probably accompanied by the net influx of a positive charge, possibly
protons. From the mechanistic viewpoint, KtrI might be either a pump or
a porter. Which mechanism fits this system? If it is a primary pump,
such as an ATP-driven K+ pump, it is likely to be a
K+-ATPase. Considering the
Vmax of KtrI activity, a
K+-stimulated ATPase activity should be readily
observable in membrane vesicles when the H+-ATPase
is blocked. Repeated efforts to find such a
K+-stimulated ATPase have not been fruitful. A
comment is in order here concerning a vanadate-sensitive ATPase
that was purified from E. hirae cell membranes by
Solioz's group (100). The entire subject of K+
transport in E. hirae was confused for a time by
reports claiming that this enzyme is a K+-transport
ATPase, probably KtrI. This claim has now been withdrawn (15) for lack of supporting evidence.
Bakker and Harold (18) favor the hypothesis that KtrI is a
secondary porter that mediates symport of K+ with a
proton(s) and is regulated by phosphorylation (or by some other
ATP-dependent covalent modification). By the trick of coupling the
uptake of K+ to that of a proton, the driving force is
greatly increased, and a potassium concentration gradient of
104 can be compatible with a membrane potential of
120
mV. Regulation of KtrI by ATP would serve the physiological purpose
of inhibiting rapid K+ loss in energy-depleted cells. The
energetics of KtrI are similar to those of the Trk system of
E. coli and of potassium transport in Bacillus
acidocaldarius (167). All these K+
transport systems show high capacity of K+ accumulation,
which requires both ATP and the membrane potential. The TrkA
subunit, a peripheral membrane protein of the E. coli Trk system, resembles NAD+-dependent dehydrogenase
(218); Schlösser et al. speculate that the ATP
requirement is secondary via NAD binding to the TrkA protein (218).
A unique E. hirae mutant with an alteration in this
system is strain 576B, in which the competitive inhibition of
K+ uptake by Na+ is markedly increased
(76). This mutation appears to reduce the specificity of the
cation binding site, especially at pH 7.5, and as a result a high
concentration of Na+ in the medium inhibits K+
uptake and growth.
KtrII (NtpJ). A second uptake system for K+ in E. hirae, one that is not dependent on the proton potential, was discovered by Kobayashi (139) during studies of mutant AS25, which is defective in the H+-ATPase and the generation of the proton potential. The small proton potential in this mutant should not support high activity of KtrI, yet the cells did accumulate K+ 5,000-fold. This proton potential-independent uptake system, KtrII, has a pH optimum around 9, does not transport Rb+ very well, and has a Km for K+