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TABLE 1. World Wide Web tools for searching databases with protein information obtained either from mass spectrometry or from Edman degradation
Site name
URL
Information available
Reference
MOWSE
http://srs.hgmp.mrc.ac.uk/cgi-bin/mowse
Peptide mass mapping and sequencing
125
ProFound
http://prowl.rockefeller.edu/cgi-bin/ProFound
Peptide mass mapping and sequencing
176
PeptIdent
http://www.expasy.ch/tools/peptident.
Peptide mass mapping and sequencing
165
PepSea
http://195.41.108.38/PepSeaIntro.html
Peptide mass mapping and sequencing
102
MASCOT
http://www.matrixscience.com/
Peptide mass mapping and sequencing
129
PepFrag
http://www.proteometrics.com/
Peptide mass mapping and sequencing
54
Protein Prospector
http://prospector.ucsf.edu/
Peptide mass mapping and sequencing
32
FindMod
http://www.expasy.ch/tools/findmod/
Posttranslational modification
166
SEAQUEST
http://fields.scripps.edu/sequest/
Uninterpreted MS/MS searching
49
FASTA Search Programs
http://fasta.bioch.virginia.edu/
Protein and nucleotide database searching
101
Cleaved Radioactivity of Phosphopeptides
http://fasta.bioch.virginia.edu/crp
Protein phosphorylation site mapping
MacDonald et al. submitted
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