This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrowReprints and Permissions
Right arrow Copyright Information
Right arrow Books from ASM Press
Right arrow MicrobeWorld
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Madison, L. L.
Right arrow Articles by Huisman, G. W.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Madison, L. L.
Right arrow Articles by Huisman, G. W.
Right arrowPubmed/NCBI databases
*Substance via MeSH

 Previous Article  |  Next Article 

Microbiology and Molecular Biology Reviews, March 1999, p. 21-53, Vol. 63, No. 1
1092-2172/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.

Metabolic Engineering of Poly(3-Hydroxyalkanoates): From DNA to Plastic

Lara L. Madison and Gjalt W. Huisman*

Metabolix, Inc., Cambridge, Massachusetts 02142

Poly(3-hydroxyalkanoates) (PHAs) are a class of microbially produced polyesters that have potential applications as conventional plastics, specifically thermoplastic elastomers. A wealth of biological diversity in PHA formation exists, with at least 100 different PHA constituents and at least five different dedicated PHA biosynthetic pathways. This diversity, in combination with classical microbial physiology and modern molecular biology, has now opened up this area for genetic and metabolic engineering to develop optimal PHA-producing organisms. Commercial processes for PHA production were initially developed by W. R. Grace in the 1960s and later developed by Imperial Chemical Industries, Ltd., in the United Kingdom in the 1970s and 1980s. Since the early 1990s, Metabolix Inc. and Monsanto have been the driving forces behind the commercial exploitation of PHA polymers in the United States. The gram-negative bacterium Ralstonia eutropha, formerly known as Alcaligenes eutrophus, has generally been used as the production organism of choice, and intracellular accumulation of PHA of over 90% of the cell dry weight have been reported. The advent of molecular biological techniques and a developing environmental awareness initiated a renewed scientific interest in PHAs, and the biosynthetic machinery for PHA metabolism has been studied in great detail over the last two decades. Because the structure and monomeric composition of PHAs determine the applications for each type of polymer, a variety of polymers have been synthesized by cofeeding of various substrates or by metabolic engineering of the production organism. Classical microbiology and modern molecular bacterial physiology have been brought together to decipher the intricacies of PHA metabolism both for production purposes and for the unraveling of the natural role of PHAs. This review provides an overview of the different PHA biosynthetic systems and their genetic background, followed by a detailed summation of how this natural diversity is being used to develop commercially attractive, recombinant processes for the large-scale production of PHAs.


* Corresponding author. Present address: Maxygen, 3410 Central Expwy., Santa Clara, CA 95051. Phone: (408) 522-6076. Fax: (408) 481-0385. E-mail: gjalt_huisman{at}maxygen.com.


Microbiology and Molecular Biology Reviews, March 1999, p. 21-53, Vol. 63, No. 1
1092-2172/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.



This article has been cited by other articles:

  • Mifune, J., Grage, K., Rehm, B. H. A. (2009). Production of Functionalized Biopolyester Granules by Recombinant Lactococcus lactis. Appl. Environ. Microbiol. 75: 4668-4675 [Abstract] [Full Text]  
  • Jendrossek, D. (2009). Polyhydroxyalkanoate Granules Are Complex Subcellular Organelles (Carbonosomes). J. Bacteriol. 191: 3195-3202 [Full Text]  
  • Elbahloul, Y., Steinbuchel, A. (2009). Large-Scale Production of Poly(3-Hydroxyoctanoic Acid) by Pseudomonas putida GPo1 and a Simplified Downstream Process. Appl. Environ. Microbiol. 75: 643-651 [Abstract] [Full Text]  
  • Fonseca, G. G., Fonseca, G. G., de Arruda-Caulkins, J. C., Vasconcellos Antonio, R. (2008). Production and characterization of poly-(3-hydroxybutyrate) from recombinant Escherichia coli grown on cheap renewable carbon substrates. Waste Manag Res 26: 546-552 [Abstract]  
  • Lu, Q., Han, J., Zhou, L., Zhou, J., Xiang, H. (2008). Genetic and Biochemical Characterization of the Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Synthase in Haloferax mediterranei. J. Bacteriol. 190: 4173-4180 [Abstract] [Full Text]  
  • Jing Xi, , Ling Zhang, , Zhenhu An Zheng, , Guoqiang Chen, , Yandao Gong, , Nanming Zhao, , Xiufang Zhang, (2008). Preparation and Evaluation of Porous Poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) Hydroxyapatite Composite Scaffolds. J Biomater Appl 22: 293-307 [Abstract]  
  • de Almeida, A., Nikel, P. I., Giordano, A. M., Pettinari, M. J. (2007). Effects of Granule-Associated Protein PhaP on Glycerol-Dependent Growth and Polymer Production in Poly(3-Hydroxybutyrate)-Producing Escherichia coli. Appl. Environ. Microbiol. 73: 7912-7916 [Abstract] [Full Text]  
  • Han, J., Lu, Q., Zhou, L., Zhou, J., Xiang, H. (2007). Molecular Characterization of the phaECHm Genes, Required for Biosynthesis of Poly(3-Hydroxybutyrate) in the Extremely Halophilic Archaeon Haloarcula marismortui. Appl. Environ. Microbiol. 73: 6058-6065 [Abstract] [Full Text]  
  • de Eugenio, L. I., Garcia, P., Luengo, J. M., Sanz, J. M., Roman, J. S., Garcia, J. L., Prieto, M. A. (2007). Biochemical Evidence That phaZ Gene Encodes a Specific Intracellular Medium Chain Length Polyhydroxyalkanoate Depolymerase in Pseudomonas putida KT2442: CHARACTERIZATION OF A PARADIGMATIC ENZYME. J. Biol. Chem. 282: 4951-4962 [Abstract] [Full Text]  
  • Tobin, K. M., McGrath, J. W., Mullan, A., Quinn, J. P., O'Connor, K. E. (2007). Polyphosphate Accumulation by Pseudomonas putida CA-3 and Other Medium-Chain-Length Polyhydroxyalkanoate-Accumulating Bacteria under Aerobic Growth Conditions. Appl. Environ. Microbiol. 73: 1383-1387 [Abstract] [Full Text]  
  • Yamada, M., Yamashita, K., Wakuda, A., Ichimura, K., Maehara, A., Maeda, M., Taguchi, S. (2007). Autoregulator Protein PhaR for Biosynthesis of Polyhydroxybutyrate [P(3HB)] Possibly Has Two Separate Domains That Bind to the Target DNA and P(3HB): Functional Mapping of Amino Acid Residues Responsible for DNA Binding. J. Bacteriol. 189: 1118-1127 [Abstract] [Full Text]  
  • Prieto, M. A. (2007). From Oil to Bioplastics, a Dream Come True?. J. Bacteriol. 189: 289-290 [Full Text]  
  • Nikel, P. I., de Almeida, A., Melillo, E. C., Galvagno, M. A., Pettinari, M. J. (2006). New Recombinant Escherichia coli Strain Tailored for the Production of Poly(3-Hydroxybutyrate) from Agroindustrial By-Products.. Appl. Environ. Microbiol. 72: 3949-3954 [Abstract] [Full Text]  
  • Tyo, K. E., Zhou, H., Stephanopoulos, G. N. (2006). High-Throughput Screen for Poly-3-Hydroxybutyrate in Escherichia coli and Synechocystis sp. Strain PCC6803.. Appl. Environ. Microbiol. 72: 3412-3417 [Abstract] [Full Text]  
  • Nikel, P. I., Pettinari, M. J., Galvagno, M. A., Mendez, B. S. (2006). Poly(3-Hydroxybutyrate) Synthesis by Recombinant Escherichia coli arcA Mutants in Microaerobiosis. Appl. Environ. Microbiol. 72: 2614-2620 [Abstract] [Full Text]  
  • Wang, C., Meek, D. J., Panchal, P., Boruvka, N., Archibald, F. S., Driscoll, B. T., Charles, T. C. (2006). Isolation of Poly-3-Hydroxybutyrate Metabolism Genes from Complex Microbial Communities by Phenotypic Complementation of Bacterial Mutants. Appl. Environ. Microbiol. 72: 384-391 [Abstract] [Full Text]  
  • Methe, B. A., Nelson, K. E., Deming, J. W., Momen, B., Melamud, E., Zhang, X., Moult, J., Madupu, R., Nelson, W. C., Dodson, R. J., Brinkac, L. M., Daugherty, S. C., Durkin, A. S., DeBoy, R. T., Kolonay, J. F., Sullivan, S. A., Zhou, L., Davidsen, T. M., Wu, M., Huston, A. L., Lewis, M., Weaver, B., Weidman, J. F., Khouri, H., Utterback, T. R., Feldblyum, T. V., Fraser, C. M. (2005). The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc. Natl. Acad. Sci. USA 102: 10913-10918 [Abstract] [Full Text]  
  • Tian, J., He, A., Lawrence, A. G., Liu, P., Watson, N., Sinskey, A. J., Stubbe, J. (2005). Analysis of Transient Polyhydroxybutyrate Production in Wautersia eutropha H16 by Quantitative Western Analysis and Transmission Electron Microscopy. J. Bacteriol. 187: 3825-3832 [Abstract] [Full Text]  
  • Ward, P. G., de Roo, G., O'Connor, K. E. (2005). Accumulation of Polyhydroxyalkanoate from Styrene and Phenylacetic Acid by Pseudomonas putida CA-3. Appl. Environ. Microbiol. 71: 2046-2052 [Abstract] [Full Text]  
  • Schultheiss, D., Handrick, R., Jendrossek, D., Hanzlik, M., Schuler, D. (2005). The Presumptive Magnetosome Protein Mms16 Is a Poly(3-Hydroxybutyrate) Granule-Bound Protein (Phasin) in Magnetospirillum gryphiswaldense. J. Bacteriol. 187: 2416-2425 [Abstract] [Full Text]  
  • Niamsiri, N., Delamarre, S. C., Kim, Y.-R., Batt, C. A. (2004). Engineering of Chimeric Class II Polyhydroxyalkanoate Synthases. Appl. Environ. Microbiol. 70: 6789-6799 [Abstract] [Full Text]  
  • Handrick, R., Reinhardt, S., Kimmig, P., Jendrossek, D. (2004). The "Intracellular" Poly(3-Hydroxybutyrate) (PHB) Depolymerase of Rhodospirillum rubrum Is a Periplasm-Located Protein with Specificity for Native PHB and with Structural Similarity to Extracellular PHB Depolymerases. J. Bacteriol. 186: 7243-7253 [Abstract] [Full Text]  
  • Garcia, B., Olivera, E. R., Sandoval, A., Arias-Barrau, E., Arias, S., Naharro, G., Luengo, J. M. (2004). Strategy for Cloning Large Gene Assemblages as Illustrated Using the Phenylacetate and Polyhydroxyalkanoate Gene Clusters. Appl. Environ. Microbiol. 70: 5019-5025 [Abstract] [Full Text]  
  • Zheng, Z., Gong, Q., Liu, T., Deng, Y., Chen, J.-C., Chen, G.-Q. (2004). Thioesterase II of Escherichia coli Plays an Important Role in 3-Hydroxydecanoic Acid Production. Appl. Environ. Microbiol. 70: 3807-3813 [Abstract] [Full Text]  
  • Sheu, D.-S., Lee, C.-Y. (2004). Altering the Substrate Specificity of Polyhydroxyalkanoate Synthase 1 Derived from Pseudomonas putida GPo1 by Localized Semirandom Mutagenesis. J. Bacteriol. 186: 4177-4184 [Abstract] [Full Text]  
  • Koski, M. K., Haapalainen, A. M., Hiltunen, J. K., Glumoff, T. (2004). A Two-domain Structure of One Subunit Explains Unique Features of Eukaryotic Hydratase 2. J. Biol. Chem. 279: 24666-24672 [Abstract] [Full Text]  
  • Moldes, C., Garcia, P., Garcia, J. L., Prieto, M. A. (2004). In Vivo Immobilization of Fusion Proteins on Bioplastics by the Novel Tag BioF. Appl. Environ. Microbiol. 70: 3205-3212 [Abstract] [Full Text]  
  • Lee, T.-R., Lin, J.-S., Wang, S.-S., Shaw, G.-C. (2004). PhaQ, a New Class of Poly-{beta}-Hydroxybutyrate (PHB)-Responsive Repressor, Regulates phaQ and phaP (Phasin) Expression in Bacillus megaterium through Interaction with PHB. J. Bacteriol. 186: 3015-3021 [Abstract] [Full Text]  
  • Handrick, R., Reinhardt, S., Schultheiss, D., Reichart, T., Schuler, D., Jendrossek, V., Jendrossek, D. (2004). Unraveling the Function of the Rhodospirillum rubrum Activator of Polyhydroxybutyrate (PHB) Degradation: the Activator Is a PHB-Granule-Bound Protein (Phasin). J. Bacteriol. 186: 2466-2475 [Abstract] [Full Text]  
  • Park, S. J., Lee, S. Y. (2003). Identification and Characterization of a New Enoyl Coenzyme A Hydratase Involved in Biosynthesis of Medium-Chain-Length Polyhydroxyalkanoates in Recombinant Escherichia coli. J. Bacteriol. 185: 5391-5397 [Abstract] [Full Text]  
  • York, G. M., Lupberger, J., Tian, J., Lawrence, A. G., Stubbe, J., Sinskey, A. J. (2003). Ralstonia eutropha H16 Encodes Two and Possibly Three Intracellular Poly[D-(-)-3-Hydroxybutyrate] Depolymerase Genes. J. Bacteriol. 185: 3788-3794 [Abstract] [Full Text]  
  • Lee, S. Y., Lee, Y. (2003). Metabolic Engineering of Escherichia coli for Production of Enantiomerically Pure (R)-(-)-Hydroxycarboxylic Acids. Appl. Environ. Microbiol. 69: 3421-3426 [Abstract] [Full Text]  
  • Hisano, T., Tsuge, T., Fukui, T., Iwata, T., Miki, K., Doi, Y. (2003). Crystal Structure of the (R)-Specific Enoyl-CoA Hydratase from Aeromonas caviae Involved in Polyhydroxyalkanoate Biosynthesis. J. Biol. Chem. 278: 617-624 [Abstract] [Full Text]  
  • Snell, K. D., Feng, F., Zhong, L., Martin, D., Madison, L. L. (2002). YfcX Enables Medium-Chain-Length Poly(3-Hydroxyalkanoate) Formation from Fatty Acids in Recombinant Escherichia coli fadB Strains. J. Bacteriol. 184: 5696-5705 [Abstract] [Full Text]  
  • Maehara, A., Taguchi, S., Nishiyama, T., Yamane, T., Doi, Y. (2002). A Repressor Protein, PhaR, Regulates Polyhydroxyalkanoate (PHA) Synthesis via Its Direct Interaction with PHA. J. Bacteriol. 184: 3992-4002 [Abstract] [Full Text]  
  • Khan, S. T., Horiba, Y., Yamamoto, M., Hiraishi, A. (2002). Members of the Family Comamonadaceae as Primary Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate)-Degrading Denitrifiers in Activated Sludge as Revealed by a Polyphasic Approach. Appl. Environ. Microbiol. 68: 3206-3214 [Abstract] [Full Text]  
  • Arai, Y., Nakashita, H., Suzuki, Y., Kobayashi, Y., Shimizu, T., Yasuda, M., Doi, Y., Yamaguchi, I. (2002). Synthesis of a Novel Class of Polyhydroxyalkanoates in Arabidopsis Peroxisomes, and Their Use in Monitoring Short-Chain-Length Intermediates of {beta}-Oxidation. Plant Cell Physiol 43: 555-562 [Abstract] [Full Text]  
  • Ewering, C., Lutke-Eversloh, T., Luftmann, H., Steinbuchel, A. (2002). Identification of novel sulfur-containing bacterial polyesters: biosynthesis of poly(3-hydroxy-S-propyl-{omega}-thioalkanoates) containing thioether linkages in the side chains. Microbiology 148: 1397-1406 [Abstract] [Full Text]  
  • Encarnacion, S., del Carmen Vargas, M., Dunn, M. F., Davalos, A., Mendoza, G., Mora, Y., Mora, J. (2002). AniA Regulates Reserve Polymer Accumulation and Global Protein Expression in Rhizobium etli. J. Bacteriol. 184: 2287-2295 [Abstract] [Full Text]  
  • Aneja, P., Dziak, R., Cai, G.-Q., Charles, T. C. (2002). Identification of an Acetoacetyl Coenzyme A Synthetase-Dependent Pathway for Utilization of L-(+)-3-Hydroxybutyrate in Sinorhizobium meliloti. J. Bacteriol. 184: 1571-1577 [Abstract] [Full Text]  
  • Sun, J., Van Dommelen, A., Van Impe, J., Vanderleyden, J. (2002). Involvement of glnB, glnZ, and glnD Genes in the Regulation of Poly-3-Hydroxybutyrate Biosynthesis by Ammonia in Azospirillum brasilense Sp7. Appl. Environ. Microbiol. 68: 985-988 [Abstract] [Full Text]  
  • York, G. M., Stubbe, J., Sinskey, A. J. (2002). The Ralstonia eutropha PhaR Protein Couples Synthesis of the PhaP Phasin to the Presence of Polyhydroxybutyrate in Cells and Promotes Polyhydroxybutyrate Production. J. Bacteriol. 184: 59-66 [Abstract] [Full Text]  
  • Lopez-Garcia, S. L., Vazquez, T. E. E., Favelukes, G., Lodeiro, A. R. (2001). Improved Soybean Root Association of N-Starved Bradyrhizobium japonicum. J. Bacteriol. 183: 7241-7252 [Abstract] [Full Text]  
  • Lee, H.-J., Choi, M. H., Kim, T.-U., Yoon, S. C. (2001). Accumulation of Polyhydroxyalkanoic Acid Containing Large Amounts of Unsaturated Monomers in Pseudomonas fluorescens BM07 Utilizing Saccharides and Its Inhibition by 2-Bromooctanoic Acid. Appl. Environ. Microbiol. 67: 4963-4974 [Abstract] [Full Text]  
  • Pettinari, M. J., Vazquez, G. J., Silberschmidt, D., Rehm, B., Steinbuchel, A., Mendez, B. S. (2001). Poly(3-Hydroxybutyrate) Synthesis Genes in Azotobacter sp. Strain FA8. Appl. Environ. Microbiol. 67: 5331-5334 [Abstract] [Full Text]  
  • York, G. M., Junker, B. H., Stubbe, J., Sinskey, A. J. (2001). Accumulation of the PhaP Phasin of Ralstonia eutropha Is Dependent on Production of Polyhydroxybutyrate in Cells. J. Bacteriol. 183: 4217-4226 [Abstract] [Full Text]  
  • McCool, G. J., Cannon, M. C. (2001). PhaC and PhaR Are Required for Polyhydroxyalkanoic Acid Synthase Activity in Bacillus megaterium. J. Bacteriol. 183: 4235-4243 [Abstract] [Full Text]  
  • Rehm, B. H. A., Mitsky, T. A., Steinbuchel, A. (2001). Role of Fatty Acid De Novo Biosynthesis in Polyhydroxyalkanoic Acid (PHA) and Rhamnolipid Synthesis by Pseudomonads: Establishment of the Transacylase (PhaG)-Mediated Pathway for PHA Biosynthesis in Escherichia coli. Appl. Environ. Microbiol. 67: 3102-3109 [Abstract] [Full Text]  
  • York, G. M., Stubbe, J., Sinskey, A. J. (2001). New Insight into the Role of the PhaP Phasin of Ralstonia eutropha in Promoting Synthesis of Polyhydroxybutyrate. J. Bacteriol. 183: 2394-2397 [Abstract] [Full Text]  
  • Sheu, D.-S., Wang, Y.-T., Lee, C.-Y. (2000). Rapid detection of polyhydroxyalkanoate-accumulating bacteria isolated from the environment by colony PCR. Microbiology 146: 2019-2025 [Abstract] [Full Text]  
  • Ren, Q., Sierro, N., Witholt, B., Kessler, B. (2000). FabG, an NADPH-Dependent 3-Ketoacyl Reductase of Pseudomonas aeruginosa, Provides Precursors for Medium-Chain-Length Poly-3-Hydroxyalkanoate Biosynthesis in Escherichia coli. J. Bacteriol. 182: 2978-2981 [Abstract] [Full Text]  
  • Fiedler, S., Steinbüchel, A., Rehm, B. H. A. (2000). PhaG-Mediated Synthesis of Poly(3-Hydroxyalkanoates) Consisting of Medium-Chain-Length Constituents from Nonrelated Carbon Sources in Recombinant Pseudomonas fragi. Appl. Environ. Microbiol. 66: 2117-2124 [Abstract] [Full Text]  
  • Cai, G.-q., Driscoll, B. T., Charles, T. C. (2000). Requirement for the Enzymes Acetoacetyl Coenzyme A Synthetase and Poly-3-Hydroxybutyrate (PHB) Synthase for Growth of Sinorhizobium meliloti on PHB Cycle Intermediates. J. Bacteriol. 182: 2113-2118 [Abstract] [Full Text]  
  • Ren, Q., Sierro, N., Kellerhals, M., Kessler, B., Witholt, B. (2000). Properties of Engineered Poly-3-Hydroxyalkanoates Produced in Recombinant Escherichia coli Strains. Appl. Environ. Microbiol. 66: 1311-1320 [Abstract] [Full Text]  
  • Sun, J., Peng, X., Van Impe, J., Vanderleyden, J. (2000). The ntrB and ntrC Genes Are Involved in the Regulation of Poly-3-Hydroxybutyrate Biosynthesis by Ammonia in Azospirillum brasilense Sp7. Appl. Environ. Microbiol. 66: 113-117 [Abstract] [Full Text]  
  • Garcia, B., Olivera, E. R., Minambres, B., Fernandez-Valverde, M., Canedo, L. M., Prieto, M. A., Garcia, J. L., Martinez, M., Luengo, J. M. (1999). Novel Biodegradable Aromatic Plastics from a Bacterial Source. GENETIC AND BIOCHEMICAL STUDIES ON A ROUTE OF THE PHENYLACETYL-CoA CATABOLON. J. Biol. Chem. 274: 29228-29241 [Abstract] [Full Text]  
  • Boynton, Z. L., Koon, J. J., Brennan, E. M., Clouart, J. D., Horowitz, D. M., Gerngross, T. U., Huisman, G. W. (1999). Reduction of Cell Lysate Viscosity during Processing of Poly(3-Hydroxyalkanoates) by Chromosomal Integration of the Staphylococcal Nuclease Gene in Pseudomonas putida. Appl. Environ. Microbiol. 65: 1524-1529 [Abstract] [Full Text]  
  • Handrick, R., Reinhardt, S., Focarete, M. L., Scandola, M., Adamus, G., Kowalczuk, M., Jendrossek, D. (2001). A New Type of Thermoalkalophilic Hydrolase of Paucimonas lemoignei with High Specificity for Amorphous Polyesters of Short Chain-length Hydroxyalkanoic Acids. J. Biol. Chem. 276: 36215-36224 [Abstract] [Full Text]