Table 3.

Codon usage in ORFs of P. denitrificansa

Amino acidCodonNo.No./1,000FractionAmino acidCodonNo.No./1,000Fraction
GlyGGG15512.440.16TrpTGG32025.691.00
GlyGGA504.010.05EndTGA967.710.87
GlyGGT564.500.06CysTGT262.090.12
GlyGGC73158.680.74CysTGC19815.890.88
GluGAG35128.180.61EndTAG70.560.06
GluGAA22417.980.39EndTAA70.560.06
AspGAT12610.110.23TyrTAT17814.290.57
AspGAC42534.120.77TyrTAC13410.760.43
ValGTG34427.610.46LeuTTG786.260.07
ValGTA110.880.01LeuTTA40.32<0.01
ValGTT362.890.05PheTTT534.250.11
ValGTC36128.980.48PheTTC41933.640.89
AlaGCG60848.810.39SerTCG34928.020.45
AlaGCA1239.870.08SerTCA655.220.08
AlaGCT806.420.05SerTCT443.530.06
AlaGCC74559.810.48SerTCC13010.440.17
ArgAGG14211.400.14ArgCGG24219.430.24
ArgAGA574.580.06ArgCGA554.420.05
SerAGT211.690.03ArgCGT302.410.03
SerAGC17213.810.22ArgCGC49739.900.49
LysAAG27922.400.81GlnCAG25320.310.81
LysAAA645.140.19GlnCAA604.820.19
AsnAAT534.250.19HisCAT1189.470.55
AsnAAC22918.380.81HisCAC957.630.45
MetATG40132.191.00LeuCTG79063.420.74
IleATA141.120.02LeuCTA40.32<0.01
IleATT483.850.08LeuCTT876.980.08
IleATC53342.790.90LeuCTC1038.270.10
ThrACG23018.460.32ProCCG45836.770.54
ThrACA544.330.07ProCCA645.140.07
ThrACT211.690.03ProCCT614.900.07
ThrACC41633.390.58ProCCC27221.840.32
  • a Including P. denitrificansGB-17.