Table 2.

Analysis of the closest neighbors for each of the cupin sequences from B. subtilisa

Sequence (gi)Closest neighborLength (aa)Identity (%)Similarity (%)Gaps (%)PFunction
Species(gi)
2633149 B. subtilis 26330149631585e-11AraC
2632815 L. monocytogenes 2745844262244775e-17AraC
2633418 B. megaterium 27645412652544129e-14AraC
2632508 E. coli 132526248234188e-13AraC
2634298 P. leiognathi 24953672432744105e-17AraC
2632900 B. subtilis 26361053115567e-102PMI
2633556 B. subtilis 26361053165670<1e-106PMI
2636105 B. subtilis 26329003115769e-107PMI
2636545 A. aeolicus 298422761c 32612e-04
2632720 M. morganii 508518b 155415514e-18
2632741 S. meliloti Unfin.c 88d 426172e-12?PKS
2636309 E. faecalis Unfin.c 86d 264420.36
2633581 D. radiodurans Unfin.c 136375725e-21
2633733 A. aeolicus 2984230175335783e-23
2635101 P. persica 19168091282238140.11GLP
2634260 B. subtilis 26358213795875e-134
2635821 B. subtilis 26342603795875e-134
2635598 C. albicans Unfin.c 101325052e-07?CDO
2636317 A. actinomyc. Unfin.c 270416249e-66dTDP-DRe
2636534 P. aeruginosa Unfin.c 236234002e-10
  • a Estimated by use of the gapped BlastP program.

  • b This sequence was identified by a TBlastN search and encodes a previously unidentified polypeptide (see the text for details).

  • c These sequences were identified by use of a TblastN search of the unfinished microbial genomes database, see text for details.

  • d These relatively short regions span the conserved two-motif section of the protein.

  • e dTDP-4-dehydrorhamnose reductase.