GeneaStrandbStartcStopcLength (bp)dLength (aa)dCorrelatione coefficientpIfMrf
17A+96933985041,5725235.1659,245
17B+96987985041,5185055.0257,108
17"+97254985041,2514164.6746,841
Pl+98513
18+985361005151,9806590.954.79571,338
Pl+100564
Pl+100623
19+1006321011234921630.994.54618,462
Term+101131
Pl+101184
20+1012071027811,5755240.995.34161,037
Pl+102539
67+102781103023243800.773.6629,106
68+1030231034484261410.9810.10815,874
Pl+103146
21+1034481040866392120.954.72523,253
21+1035141040865731905.13420,834
Pl+104095
22+1041171049268102690.924.49829,906
Pl+104787
Pl+104816
23+1049451065101,5665210.975.2956,023
Term+106537
segD1072321065616722230.999.74025,619
Pl+107301
24+1073231086061,2844270.924.61846,998
Term+108613
Term+108668
rnlB = 24.11096401086361,0053340.995.66637,631
24.2109928109650279920.874.92311,003
24.3110085109915171560.8510.226,550
Term110180
hoc1113171101871,3173760.934.62640,388
inh1120071113276812260.974.30425,570
Pl112029
Pl+112034
segE+1120571126746182050.924.55922,896
Pl+112588
uvsW+1126771144401,7645870.9310.30467,526
Term114472
uvsY.-2114663114496168550.914.3236,062
Pl114681
uvsY.-1114914114690225740.744.9398,963
uvsY1153271149144141370.888.5315,840
Pm115371
251158021154043991320.954.4915,096
26116089115802288955.2710,856
Pl116412
261164281158026272080.865.74823,883
Pl116436
Pl116444
Pl+116467
51+1164791172287502490.916.22929,340
27+1172281184031,1763910.975.2444,462
28+1183481188815341770.945.7520,122
29+1188781206501,7735900.954.93164,416
48+1206591217531,0953640.768.71539,738
54+1217531227159633200.875.38334,981
Term+122720
alt.-3123032122742291960.934.5810,704
Pe123057
alt.-2123268123065204670.709.817,382
alt.-1123450123265186610.955.716,622
alt1255021234542,0496820.956.15875,819
Pl125525
Term125558
alt.1125748125560189620.894.3717,153
301272081257451,4644870.986.31555,299
Pm127234
30.1127474127205270890.82810,833
30.21283101274748372780.946.24132,433
Pm128355
30.312862912840222875−0.1710.48,945
30.31287651283074591520.858.84917,088
30.4128964128758207680.954.5358,064
30.5129158128961198650.825.0917,252
30.6129445129158288950.887.1910,814
30.71298521294873661210.827.30514,131
Pe (128.2)129883
30.81302531299213331100.946.61212,893
Pe (128.6)130274
Term130358
Term130402
30.9130540130364177580.9211.446,519
rIII131033130785249820.908.4799,325
Pl131167
311315161311813361110.895.31512,079
Pm131540
31.11318811315733091020.849.11311,520
31.2132118131882237780.719.8069,397
cd1326991321185821930.907.83321,200
cd.11330341326963391120.848.13812,814
cd.2133261133031231760.694.82310,131
Pe (131.7)133295
Term133376
cd.3133609133334276910.884.8210,131
cd.4133812133612201660.834.197,918
cd.5134032133805228750.818.5218,738
pseT1349071340029063010.968.67134,622
pseT.1135135134908228750.748.4558,833
pseT.2135431135132300990.758.57711,645
pseT.31357811354283541170.908.94713,136
alc1362751357725041670.947.2318,962
Pe (134.4)136300
Pl+136889
rnlA = 631374641363401,1253740.964.88543,514
denA1379511375174351440.949.44216,744
Term137950
nrdB+1384571379555033880.924.92445,357
I-TevIII13888638593294970.789.01111,331
Pl138933
Pm138939
nrdB+139719139056664
Pm139878
nrdB.1139967139716252830.839.8749,409
Term140384
mobE1404161399914261410.9410.10216,448
nrdA1426801404162,2657540.986.11785,982
Pm142725
nrdA.11429971426713271080.709.03512,362
nrdA.2143214142951264870.965.23310,065
td+1435461432353122860.898.61733,077
I-TevI1444311436947382450.839.62528,175
Pl144449
td+145112144564549
Pm145142
frd1456901451095821930.986.3521,714
frd.1146004145762243800.754.8439,471
Term146051
frd.21465291461433871280.734.28114,742
frd.3146802146575228750.853.6998,820
Pe (144.6)146839146833
Term146925
321478531469489063010.964.68133,509
Pl147998
Pm148057
segG = 32.11485411479096332100.957.19424,564
591491961485436542170.899.38726,000
331495311491933391120.934.3812,831
dsbA149778149509270890.964.96910,379
Pm149873
rnh1507041497879183050.978.53535,562
Pe (148.6)150727
Pl+150780
34+150809154678387012890.945.206140,416
Pm153011
35+1546871558051,1193720.844.9640,123
Term+155811
Pl+155850
36+1558681565336662210.928.07223,343
Pl+156369
37+1565421596223,0811,0260.878.537109,226
Term+159628
38+1596491602005521830.886.63322,311
Pl+160209
t+1602211608776572180.947.92125,178
Term+160924
asiA161150160878273900.955.39510,590
Pe (158.7)161175
asiA.1161315161163153500.894.515,935
arn161590161312279920.814.35110,903
arn.1161805161674132430.548.3345,173
arn.2162172161876297980.595.24312,402
arn.31626301621724591520.905.07817,837
arn.4162833162627207680.999.2412,802
motA1636021629676362110.968.77223,577
Pe (161.1)163637
Term163724
motA.1163879163730150490.4910.0364,842
521652041638761,3294420.998.79950,582
52.1165349165209141460.428.6495,098
Term165332
ac165497165342156510.513.9165,472
stp1655851655058126−0.1410.283,184
ndd1660401655854561510.859.52416,935
ndd.1166316166101216710.864.1118,143
ndd.2166435166325111360.095.8184,354
ndd.2a166554166432123400.737.144,303
ndd.31666281665488126−0.498.253,019
ndd.4166764166636129420.118.6224,954
Pe (164.2)166771
ndd.516691316681599320.817.0823,687
ndd.61669961669108728−0.058.0143,406
Pe (164.5)167050
denB1676601671035581850.917.23221,162
Term167736
denB.1167937167743195640.528.1347,452
rIIB1689031679659393120.966.2435,544
End168903
  • a Genes are listed sequentially as they appear in the GenBank file (accession no. AF158101), clockwise on the circular map (by convention) starting with the first base 5′ of rIIB. Recently renamed genes, or those with multiple names, are labeled with =. Intron-containing or translational bypass genes (nrdB+, 60+) are noted with a+ for each reading frame. Genes marked with a prime (′) are overlapping with, or internal to, the designated gene. Transcription signals listed are Pe, Pm, and Pl for early, middle and late promoters, respectively, and Ter for terminator. Pe entries in parentheses are promoter designations used in earlier literature.

  • b The coding strand is noted as either the GenBank deposited (+) sequence or the complement (−).

  • c Start and stop coordinates denote the first base of the coding region (usually the A of the initiator ATG) and the last base of the stop codon. Promoter coordinates given are either the mapped or predicted transcript start sites (the “+1” position), and terminator coordinates are the first 5′ base of the hairpin.

  • d The length (bp) entry includes the stop codon of each coding sequence. Only the mature protein length (aa) is given for those proteins that arise from spliced or bypassed genes.

  • e The correlation coefficient given for each gene is the probability of an ORF being a T4 gene based on the codon usage in characterized T4 genes. The program was written by Gary Stormo and is available at the web site: http://www.lecb.ncifcrf.gov/∼toms/delila/frame.html.

  • f pI and Mr are calculated values.