TABLE 16.

Neurospora bromodomain and chromodomain proteinsa

ProteinLocus (gene)Match found by BLAST
Best matchS. cerevisiaeS. pombeAnimalbPlantc
Bromodomain proteins
    ScRsc1/Rsc22354.1 (pbd-1) P. anserina; 06e-764e-682e-20No match
    SpBrd12078.1 (pbd-2) M. musculus No match1e-61e-8No match
    SpBdf1-like8809.1 (bdp-1) D. rerio No match4e-128e-142e-12
    ScSpt72276.1 (bdp-2) S. pombe 4e-381e-424e-14No match
    ScBdf18423.1 (bdp-3) S. pombe 1e-183e-194e-182e-14
Chromodomain proteins
    DmHP1/SpSwi64017.1 (hpo) S. pombe No match3e-80.005No match
    CDP-18362.1 (cdp-1) H. sapiens No match0.0015e-7No match
    CDP-2738.1 (cdp-2) H. sapiens No matchNo match0.087No match
    CDP-31522.1 (cdp-3) D. melanogaster No matchNo match0.001No match
  • a This table excludes CRF3-1 (bromodomain) and CRF6-1 and CRF7-1 (chromodomains). There are also several RIP-mutated relics of retrotransposons whose inactive POL genes match chromodomains in BLAST searches.

  • b Drosophila melanogaster, Mus musculus, Homo sapiens, Danio rerio, or Caenorhabditis elegans.

  • c Arabidopsis thaliana or Oryza sativa.