TABLE 7.

Neurospora homologues of predicted chromatin-remodeling factors

ProteinNCU no. (gene)Match found by BLAST
Best matchcS. cerevisiaeS. pombeAnimalaPlantb
INO80/DOMINO
    ScSwr19993.1 (crf1-1)S. cerevisiae0.00.01e-1210.00
    ScIno808919.1 (crf2-1)S. cerevisiae0.01e-1461e-1171e-164
Swi2/Snf2/BRM
    ScSwi2/Snf26488.1 (crf3-1)S. pombe0.00.00.000
ISWI
    DmISWI3875.1 (crf4-1)S. cerevisiae0.00.00.00.0
    ScIoc42684.1 (crf4-3)S. pombe0.0356e-6No matchNo match
    ScItc1164.1 (crf4-2)S. cerevisiae7e-21No match4e-65e-7
Lsh/ScYFK8
    HsLSH6306.1 (crf5-1)A. fumigatus; 9e-951e-59No match2e-642e-56
Mi-2
    ScChd1/HsCHD23060.1 (crf6-1)S. pombe0.00.01e-1731e-160
    HsCHD3/Mi-21406.1 (crf7-1)S. pombe1e-96 (Chd1)1e-1551e-1111e-115
    AtGYMNOS
TAF172/Mot1-like
    HsTAF1727556.1 (crf8-1)S. pombe1e-690.00.00.0
Ris1
    ScRis10631.1 (crf9-1)S. pombe6e-701e-1182e-472e-59
    ScRis1-like/Dm LODESTAR-like4786.1S. pombe5e-43 (Ris1)4e-704e-503e-50
Role in transcription?
    POLII term. factor7358.1S. pombeNo match1e-135e-93e-12
    POLII term. factor4445.1H. sapiens4e-21 (Ris1)1e-39 (Rad8, Rhp16)1e-399e-37 (Rad5)
    HsETL-like7975.1A. thaliana3e-66 (Rad16)1e-72 (Rad8)2e-851e-110
    HsETL-like5246.1A. thalianaNo match4e-57 (Rhp16)9e-731e-84
    Viral activator2913.1C. fumiferana MNPV; 3e-42No match4e-31 (Rhp16)9e-731e-33
    Activator protein4424.1dA. thalianaNo matchNo match3e-246e-32
Fun30/ETL1
    ScFun30/HsETL19106.1 (crf10-1)S. pombe1e-1041e-1221e-1051e-74
  • a Drosophila melanogaster, Anopheles gambiae, Mus musculus, or Homo sapiens.

  • b Arabidopsis thaliana, Zea mays, or Oryza sativa.

  • c Species listed as best match are Aspergillus fumigatus and Choristoneura fumiferana multicapsid nucleopolyhedrovirus (MNPV).

  • d NCU04424.1 may be misannotated (the 5′ region is too short), and a homologue of A. nidulans sonB, a nucleoporin (NCU04784.1) is annotated as containing a SNF2 domain.